diff test-data/emboss_compseq_out.compseq @ 1:7334f6d0ac17

Uploaded emboss functional test input and output data files.
author devteam
date Wed, 21 Mar 2012 16:30:01 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_compseq_out.compseq	Wed Mar 21 16:30:01 2012 -0400
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+#
+# Output from 'compseq'
+#
+# The Expected frequencies are calculated on the (false) assumption that every
+# word has equal frequency.
+#
+# The input sequences are:
+#	Sequence
+
+
+Word size	2
+Total count	560
+
+#
+# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency
+#
+AA	40		0.0714286	0.0625000	1.1428571
+AC	27		0.0482143	0.0625000	0.7714286
+AG	26		0.0464286	0.0625000	0.7428571
+AT	41		0.0732143	0.0625000	1.1714286
+CA	26		0.0464286	0.0625000	0.7428571
+CC	24		0.0428571	0.0625000	0.6857143
+CG	15		0.0267857	0.0625000	0.4285714
+CT	41		0.0732143	0.0625000	1.1714286
+GA	19		0.0339286	0.0625000	0.5428571
+GC	17		0.0303571	0.0625000	0.4857143
+GG	19		0.0339286	0.0625000	0.5428571
+GT	43		0.0767857	0.0625000	1.2285714
+TA	50		0.0892857	0.0625000	1.4285714
+TC	38		0.0678571	0.0625000	1.0857143
+TG	37		0.0660714	0.0625000	1.0571429
+TT	97		0.1732143	0.0625000	2.7714286
+
+Other	0		0.0000000	0.0000000	10000000000.0000000