Mercurial > repos > devteam > emboss_5
diff emboss_chips.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_chips.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,31 @@ +<tool id="EMBOSS: chips10" name="chips" version="5.0.0"> + <description>Codon usage statistics</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>chips -seqall '$input1' -outfile '$out_file1' -sum $sum -auto</command> + <inputs> + <param name="input1" type="data" format="data" label="On query" /> + <param name="sum" type="select" label="Sum codons over all sequences"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + </inputs> + <outputs> + <data name="out_file1" format="chips" /> + </outputs> + <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="sum" value="yes"/> + <output name="out_file1" file="emboss_chips_out.chips"/> + </test> + </tests> + <help> + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/chips.html + </help> + <expand macro="citations" /> +</tool>