diff emboss_chips.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
parents
children 8992d258e42f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_chips.xml	Wed Feb 08 12:42:22 2017 -0500
@@ -0,0 +1,31 @@
+<tool id="EMBOSS: chips10" name="chips" version="5.0.0">
+  <description>Codon usage statistics</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <command>chips -seqall '$input1' -outfile '$out_file1' -sum $sum -auto</command>
+  <inputs>
+    <param name="input1" type="data" format="data" label="On query" />
+    <param name="sum" type="select" label="Sum codons over all sequences">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data name="out_file1" format="chips" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="2.fasta"/>
+      <param name="sum" value="yes"/>
+      <output name="out_file1" file="emboss_chips_out.chips"/>
+    </test>
+  </tests>
+  <help>
+    You can view the original documentation here_.
+
+    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/chips.html
+  </help>
+  <expand macro="citations" />
+</tool>