diff emboss_dotpath.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_dotpath.xml	Wed Feb 08 12:42:22 2017 -0500
@@ -0,0 +1,31 @@
+<tool id="EMBOSS: dotpath25" name="dotpath" version="5.0.0.1">
+  <description>Non-overlapping wordmatch dotplot of two sequences</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' dotpath -asequence '$input1' -bsequence '$input2' -goutfile '$out_file1' -wordsize $wordsize -overlaps $overlaps -boxit $boxit -graph png -auto</command>
+  <inputs>
+    <param name="input1" type="data" format="data" label="Sequence 1" />
+    <param name="input2" type="data" format="data" label="Sequence 2" />
+    <param name="wordsize" type="integer" min="2" value="4" label="Word size" />
+    <param name="overlaps" type="select" label="Display the overlapping matches (in red) as well as the minimal set of non-overlapping matches">
+      <option value="no">No</option>
+      <option value="yes">Yes</option>
+    </param>
+    <param name="boxit" type="select" label="Draw a box around dotplot">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data name="out_file1" format="png" />
+  </outputs>
+  <!-- functional tests not possible since image output contains file name information and timestamp -->
+  <help>
+    You can view the original documentation here_.
+
+    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dotpath.html
+  </help>
+  <expand macro="citations" />
+</tool>