Mercurial > repos > devteam > emboss_5
diff emboss_pepcoil.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_pepcoil.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,43 @@ +<tool id="EMBOSS: pepcoil68" name="pepcoil" version="5.0.0.1"> + <description>Predicts coiled coil regions</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>pepcoil -sequence '$input1' -outfile '$out_file1' -window $window -coil $coil -frame $frame -other $other -auto</command> + <inputs> + <param name="input1" type="data" format="data" label="Sequence" /> + <param name="window" type="integer" value="28" label="Window size" /> + <param name="coil" type="select" label="Report coiled coil regions"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="frame" type="select" label="Show coil frameshifts"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="other" type="select" label="Report non coiled coil regions"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + </inputs> + <outputs> + <data name="out_file1" format="pepcoil" /> + </outputs> + <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="window" value="28"/> + <param name="coil" value="yes"/> + <param name="frame" value="yes"/> + <param name="other" value="yes"/> + <output name="out_file1" file="emboss_pepcoil_out.pepcoil"/> + </test> + </tests> + <help> + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepcoil.html + </help> + <expand macro="citations" /> +</tool>