diff emboss_plotorf.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_plotorf.xml	Wed Feb 08 12:42:22 2017 -0500
@@ -0,0 +1,37 @@
+<tool id="EMBOSS: plotorf76" name="plotorf" version="5.0.0">
+  <!-- produces png file output -->
+  <description>Plot potential open reading frames</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' plotorf -sequence '$input1' -graph png -goutfile '$out_file1' -start '$start' -stop '$stop' -auto</command>
+  <inputs>
+    <param name="input1" type="data" format="fasta" label="Sequence" />
+    <param name="start" type="text" value="ATG" label="Start codons" />
+    <param name="stop" type="text" value="TAA" label="Stop codons" />
+  </inputs>
+  <outputs>
+    <data name="out_file1" format="png" />
+  </outputs>
+  <!--  <tests>
+    <test>
+      <param name="input1" value="2.fasta"/>
+      <param name="start" value="ATG"/>
+      <param name="stop" value="TAA"/>
+      <output name="out_file1" file="emboss_plotorf_out.png"/>
+    </test>
+  </tests> -->
+  <help>
+.. class:: warningmark
+
+The input dataset needs to be sequences.
+
+-----
+
+    You can view the original documentation here_.
+
+    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/plotorf.html
+  </help>
+  <expand macro="citations" />
+</tool>