Mercurial > repos > devteam > emboss_5
diff emboss_plotorf.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_plotorf.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,37 @@ +<tool id="EMBOSS: plotorf76" name="plotorf" version="5.0.0"> + <!-- produces png file output --> + <description>Plot potential open reading frames</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' plotorf -sequence '$input1' -graph png -goutfile '$out_file1' -start '$start' -stop '$stop' -auto</command> + <inputs> + <param name="input1" type="data" format="fasta" label="Sequence" /> + <param name="start" type="text" value="ATG" label="Start codons" /> + <param name="stop" type="text" value="TAA" label="Stop codons" /> + </inputs> + <outputs> + <data name="out_file1" format="png" /> + </outputs> + <!-- <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="start" value="ATG"/> + <param name="stop" value="TAA"/> + <output name="out_file1" file="emboss_plotorf_out.png"/> + </test> + </tests> --> + <help> +.. class:: warningmark + +The input dataset needs to be sequences. + +----- + + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/plotorf.html + </help> + <expand macro="citations" /> +</tool>