Mercurial > repos > devteam > emboss_5
diff emboss_polydot.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
---|---|
date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_polydot.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,44 @@ +<tool id="EMBOSS: polydot77" name="polydot" version="5.0.0.1"> + <!-- produces png file, not added functional tests --> + <description>Displays all-against-all dotplots of a set of sequences</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' polydot -sequence '$input1' -graph png -goutfile '$output2' -outfeat '$output1' -wordsize $wordsize -boxit $boxit -dumpfeat yes -gap + $gap -auto</command> + <inputs> + <param name="input1" type="data" format="fasta" label="Sequence" /> + <param name="wordsize" type="integer" value="6" label="Word size" /> + <param name="boxit" type="select" label="Draw a box around each dotplot"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="gap" type="integer" value="10" label="Size of gap" /> + </inputs> + <outputs> + <data name="output1" format="polydot" /> + <data name="output2" format="png" /> + </outputs> +<!-- <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="wordsize" value="6"/> + <param name="boxit" value="yes"/> + <param name="gap" value="10"/> + <output name="output1" file="emboss_polydot_out.png"/> + </test> + </tests>--> + <help> +.. class:: warningmark + +The input dataset needs to be sequences. + +----- + + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/polydot.html + </help> + <expand macro="citations" /> +</tool>