diff emboss_primersearch.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_primersearch.xml	Wed Feb 08 12:42:22 2017 -0500
@@ -0,0 +1,30 @@
+<tool id="EMBOSS: primersearch81" name="primersearch" version="5.0.0.1">
+  <description>Searches DNA sequences for matches with primer pairs</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <command>primersearch -seqall '$input1' -infile '$input2' -outfile '$out_file1' -mismatchpercent $mismatchpercent -auto</command>
+  <inputs>
+    <param name="input1" type="data" format="fasta" label="Main sequences" />
+    <param name="input2" type="data" format="data" label="Primer file" />
+    <param name="mismatchpercent" type="integer" value="0" label="Allowed percent mismatch" />
+  </inputs>
+  <outputs>
+    <data name="out_file1" format="primersearch" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="2.fasta"/>
+      <param name="input2" value="emboss_primersearch.fasta"/>
+      <param name="mismatchpercent" value="0"/>
+      <output name="out_file1" file="emboss_primersearch_out.primersearch"/>
+    </test>
+  </tests>
+  <help>
+    You can view the original documentation here_.
+
+    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/primersearch.html
+  </help>
+  <expand macro="citations" />
+</tool>