Mercurial > repos > devteam > emboss_5
diff emboss_single_outputfile_wrapper.pl @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
---|---|
date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | dba489bfcd62 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_single_outputfile_wrapper.pl Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,27 @@ +#! /usr/bin/perl -w +use strict; +use File::Copy; + +my $cmd_string = join (" ",@ARGV); +my $results = `$cmd_string`; +my @files = split("\n",$results); +my $fileNameOut = $ARGV[6]; +my ($drive, $outputDir, $file) = File::Spec->splitpath( $fileNameOut ); +my $destination = $fileNameOut; + +foreach my $thisLine (@files) +{ + if ($thisLine =~ /Created /) + { + $thisLine =~ /[\w|\.]+$/; + $thisLine =$&; + #print "outfile: $thisLine\n"; + #there is only one file to move, so we can quit after finding it + move($drive.$outputDir.$thisLine,$fileNameOut); + exit(1); + } + else + { + print $thisLine,"\n"; + } +}