view emboss_iep.xml @ 13:8992d258e42f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9844cae766e7471d9fa6b2e8356e5194e77f6753

<tool id="EMBOSS: iep45" name="iep" version="@VERSION@.1">
  <description>Calculates the isoelectric point of a protein</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>iep -sequence '$input1' -outfile '$out_file1' -step $step -amino $amino -graph png -termini $termini -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequences" />
    <param name="step" type="float" value="0.5" label="Step value for pH" />
    <param name="amino" type="integer" value="1" label="Number of N-termini" />
    <param name="termini" type="select" label="Include charge at N and C terminus">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="txt" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="step" value="0.5"/>
      <param name="amino" value="1"/>
      <param name="termini" value="yes"/>
      <output name="out_file1" file="emboss_iep_out.iep"/>
    </test>
  </tests>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/iep.html
  </help>
  <expand macro="citations" />
</tool>