view emboss_cai_custom.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

<tool id="EMBOSS: cai_custom6" name="cai custom" version="5.0.0">
  <description>CAI codon adaptation index using custom codon usage file</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>cai -seqall '$input1' -outfile '$out_file1' -cfile '$input2' -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="On query" />
    <param name="input2" type="data" format="txt" label="Codon usage file" />
  </inputs>
  <outputs>
    <data name="out_file1" format="txt" />
  </outputs>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/cai.html
  </help>
  <expand macro="citations" />
</tool>