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view emboss_infoseq.xml @ 16:dba489bfcd62 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
author | iuc |
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date | Mon, 02 Dec 2019 21:13:50 -0500 |
parents | 8992d258e42f |
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<tool id="EMBOSS: infoseq46" name="infoseq" version="@VERSION@"> <!-- info contains file information always --> <description>Displays some simple information about sequences</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <code file="emboss_format_corrector.py" /> <command>infoseq -sequence '$input1' -outfile '$out_file1' -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc $pgc -description $description -auto</command> <inputs> <param name="input1" type="data" format="data" label="Sequences" /> <param name="html_out1" type="select" label="Format output as an HTML table"> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="heading" type="select" label="Display column headings"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="usa" type="select" label="Display the USA of the sequence"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="disname" type="select" label="Display 'name' column"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="accession" type="select" label="Display 'accession' column"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="gi" type="select" label="Display 'GI' column"> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="version" type="select" label="Display 'version' column"> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="type" type="select" label="Display 'type' column"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="length" type="select" label="Display 'length' column"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="pgc" type="select" label="Display 'percent GC content' column"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="description" type="select" label="Display 'description' column"> <option value="yes">Yes</option> <option value="no">No</option> </param> </inputs> <outputs> <data name="out_file1" format="txt" /> </outputs> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/infoseq.html </help> <expand macro="citations" /> </tool>