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view emboss_pepwheel.xml @ 16:dba489bfcd62 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
author | iuc |
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date | Mon, 02 Dec 2019 21:13:50 -0500 |
parents | 8992d258e42f |
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<tool id="EMBOSS: pepwheel72" name="pepwheel" version="@VERSION@.1"> <!-- produces png file --> <description>Shows protein sequences as helices</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' pepwheel -sequence '$input1' -graph png -goutfile '$out_file1' -squares '$squares' -diamonds '$diamonds' -octags '$octags' -amphipathic $amphipathic -steps $steps -turns $turns -wheel $wheel -auto</command> <inputs> <param name="input1" type="data" format="data" label="Sequence" /> <param name="steps" type="integer" value="18" label="Steps, the number of residues plotted per turn is this value divided by the 'turns' value" /> <param name="turns" type="integer" value="5" label="Turns, the number of residues plotted per turn is the 'steps' value divided by this value" /> <param name="squares" type="text" value="ILVM" label="Residues to mark with squares" /> <param name="diamonds" type="text" value="DENQST" label="Residues to mark with diamonds" /> <param name="octags" type="text" value="HKR" label="Residues to mark with octagons" /> <param name="wheel" type="select" label="Plot the wheel"> <option value="yes">Yes</option> <option value="no">No</option> </param> <param name="amphipathic" type="select" label="Amphipathic?" help="If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified" > <option value="no">No</option> <option value="yes">Yes</option> </param> </inputs> <outputs> <data name="out_file1" format="png" /> </outputs> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepwheel.html </help> <expand macro="citations" /> </tool>