view emboss_infoseq.xml @ 15:dc492eb6a4fc draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522

<tool id="EMBOSS: infoseq46" name="infoseq" version="@VERSION@">
  <!-- info contains file information always -->
  <description>Displays some simple information about sequences</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <code file="emboss_format_corrector.py" />
  <command>infoseq -sequence '$input1' -outfile '$out_file1' -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
  $pgc -description $description -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequences" />
    <param name="html_out1" type="select" label="Format output as an HTML table">
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="heading" type="select" label="Display column headings">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="usa" type="select" label="Display the USA of the sequence">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="disname" type="select" label="Display 'name' column">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="accession" type="select" label="Display 'accession' column">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="gi" type="select" label="Display 'GI' column">
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="version" type="select" label="Display 'version' column">
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="type" type="select" label="Display 'type' column">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="length" type="select" label="Display 'length' column">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="pgc" type="select" label="Display 'percent GC content' column">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="description" type="select" label="Display 'description' column">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="txt" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/infoseq.html
  </help>
  <expand macro="citations" />
</tool>