Mercurial > repos > devteam > emboss_5
changeset 16:dba489bfcd62 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b"
| author | iuc |
|---|---|
| date | Mon, 02 Dec 2019 21:13:50 -0500 |
| parents | dc492eb6a4fc |
| children | ce385837c160 |
| files | emboss_cpgplot_wrapper.pl emboss_infoseq_wrapper.pl emboss_multiple_outputfile_wrapper.pl emboss_single_outputfile_wrapper.pl macros.xml |
| diffstat | 5 files changed, 3 insertions(+), 30 deletions(-) [+] |
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--- a/emboss_cpgplot_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ b/emboss_cpgplot_wrapper.pl Mon Dec 02 21:13:50 2019 -0500 @@ -1,5 +1,5 @@ -#! /usr/bin/perl -w use strict; +use warnings; use File::Copy; my $cmd_string = join (" ",@ARGV);
--- a/emboss_infoseq_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -#! /usr/bin/perl -w -use strict; - -my $cmd_string = join (" ",@ARGV); -my $results = `$cmd_string`; -if ($ARGV[6]=~/yes/) -{ - print "Extension: html\n"; -}
--- a/emboss_multiple_outputfile_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,19 +0,0 @@ -#! /usr/bin/perl -w -use strict; - -my $cmd_string = join (" ",@ARGV); -my $results = `$cmd_string`; -my @files = split("\n",$results); -foreach my $thisLine (@files) -{ - if ($thisLine =~ /Created /) - { - $thisLine =~ /[\w|\.]+$/; - $thisLine =$&; - print "outfile: $thisLine\n"; - } - else - { - print $thisLine,"\n"; - } -}
--- a/emboss_single_outputfile_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ b/emboss_single_outputfile_wrapper.pl Mon Dec 02 21:13:50 2019 -0500 @@ -1,5 +1,5 @@ -#! /usr/bin/perl -w use strict; +use warnings; use File::Copy; my $cmd_string = join (" ",@ARGV);
--- a/macros.xml Mon Jan 28 14:50:36 2019 -0500 +++ b/macros.xml Mon Dec 02 21:13:50 2019 -0500 @@ -3,6 +3,7 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">emboss</requirement> + <requirement type="package" version="5.26">perl</requirement> </requirements> </xml> <xml name="stdio">