Mercurial > repos > devteam > fasta_concatenate_by_species

diff fasta_concatenate_by_species.xml @ 2:16df616b39e5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_concatenate_by_species commit cd1ed08574b749eee2a3f6e6151dbb0c8ca15bbf"
author devteam
date Sun, 01 Mar 2020 07:24:26 -0500
parents 717aee069681
children
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--- a/fasta_concatenate_by_species.xml	Mon Nov 17 10:15:05 2014 -0500
+++ b/fasta_concatenate_by_species.xml	Sun Mar 01 07:24:26 2020 -0500
@@ -1,9 +1,13 @@
-<tool id="fasta_concatenate0" name="Concatenate" version="0.0.0">
+<tool id="fasta_concatenate0" name="Concatenate" version="0.0.1" profile="16.04">
   <description>FASTA alignment by species</description>
   <requirements>
-    <requirement type="package" version="0.7.1">bx-python</requirement>
+    <requirement type="package" version="0.8.8">bx-python</requirement>
   </requirements>
-  <command interpreter="python">fasta_concatenate_by_species.py $input1 $out_file1</command>
+  <command>
+    python '$__tool_directory__/fasta_concatenate_by_species.py'
+      '$input1'
+      '$out_file1'
+  </command>
   <inputs>
     <param name="input1" type="data" format="fasta" label="FASTA alignment"/>
   </inputs>
@@ -16,7 +20,7 @@
       <output name="out_file1" file="fasta_concatenate_out.fasta" />
     </test>
   </tests>
-  <help>
+  <help><![CDATA[
   
 **What it does**
   
@@ -71,5 +75,5 @@
 
  This tool will only work properly on files with Galaxy style FASTA headers.
 
-</help>
+   ]]></help>
 </tool>