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comparison fasta_formatter.xml @ 1:1dbb5181c327

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Removed excess version attributes.
author Dave Bouvier <dave@bx.psu.edu>
date Tue, 03 Dec 2013 12:36:12 -0500
parents 8f0ae92440b8
children 9457a20156db
comparison
equal deleted inserted replaced
0:8f0ae92440b8 1:1dbb5181c327
12 So this XML tool only changes the width (line-wrapping) of a 12 So this XML tool only changes the width (line-wrapping) of a
13 FASTA file. 13 FASTA file.
14 --> 14 -->
15 <command>zcat -f '$input' | fasta_formatter -w $width -o $output</command> 15 <command>zcat -f '$input' | fasta_formatter -w $width -o $output</command>
16 <inputs> 16 <inputs>
17 <param format="fasta" version="1.0.0" name="input" type="data" label="Library to re-format" /> 17 <param format="fasta" name="input" type="data" label="Library to re-format" />
18 18
19 <param version="1.0.0" name="width" type="integer" value="0" label="New width for nucleotides strings" help="Use 0 for single line out." /> 19 <param name="width" type="integer" value="0" label="New width for nucleotides strings" help="Use 0 for single line out." />
20 </inputs> 20 </inputs>
21 21
22 <tests> 22 <tests>
23 <test> 23 <test>
24 <!-- Re-format a FASTA file into a single line --> 24 <!-- Re-format a FASTA file into a single line -->
25 <param version="1.0.0" name="input" value="fasta_formatter1.fasta" /> 25 <param name="input" value="fasta_formatter1.fasta" />
26 <param version="1.0.0" name="width" value="0" /> 26 <param name="width" value="0" />
27 <output version="1.0.0" name="output" file="fasta_formatter1.out" /> 27 <param name="output" file="fasta_formatter1.out" />
28 </test> 28 </test>
29 <test> 29 <test>
30 <!-- Re-format a FASTA file into multiple lines wrapping at 60 charactes --> 30 <!-- Re-format a FASTA file into multiple lines wrapping at 60 charactes -->
31 <param version="1.0.0" name="input" value="fasta_formatter1.fasta" /> 31 <param name="input" value="fasta_formatter1.fasta" />
32 <param version="1.0.0" name="width" value="60" /> 32 <param name="width" value="60" />
33 <output version="1.0.0" name="output" file="fasta_formatter2.out" /> 33 <param name="output" file="fasta_formatter2.out" />
34 </test> 34 </test>
35 </tests> 35 </tests>
36 36
37 <outputs> 37 <outputs>
38 <data format="input" version="1.0.0" name="output" metadata_source="input" /> 38 <data format="input" name="output" metadata_source="input" />
39 </outputs> 39 </outputs>
40 40
41 <help> 41 <help>
42 **What it does** 42 **What it does**
43 43