# HG changeset patch # User devteam # Date 1444659331 14400 # Node ID 9457a20156db7ca9a16e8d53ab27384e721ea636 # Parent 1dbb5181c3270ed9f600b06c4266205556385a4b planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734 diff -r 1dbb5181c327 -r 9457a20156db fasta_formatter.xml --- a/fasta_formatter.xml Tue Dec 03 12:36:12 2013 -0500 +++ b/fasta_formatter.xml Mon Oct 12 10:15:31 2015 -0400 @@ -1,48 +1,49 @@ - formatter + formatter fastx_toolkit - - zcat -f '$input' | fasta_formatter -w $width -o $output - - - - - + So this XML tool only changes the width (line-wrapping) of a + FASTA file. + --> + + + + + - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + **What it does** This tool re-formats a FASTA file, changing the width of the nucleotides lines. - + **TIP:** Outputting a single line (with **width = 0**) can be useful for scripting (with **grep**, **awk**, and **perl**). Every odd line is a sequence identifier, and every even line is a nucleotides line. -------- @@ -84,6 +85,5 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. .. __: http://hannonlab.cshl.edu/fastx_toolkit/ - - + diff -r 1dbb5181c327 -r 9457a20156db tool_dependencies.xml --- a/tool_dependencies.xml Tue Dec 03 12:36:12 2013 -0500 +++ b/tool_dependencies.xml Mon Oct 12 10:15:31 2015 -0400 @@ -1,6 +1,6 @@ - +