# HG changeset patch
# User devteam
# Date 1444659331 14400
# Node ID 9457a20156db7ca9a16e8d53ab27384e721ea636
# Parent 1dbb5181c3270ed9f600b06c4266205556385a4b
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
diff -r 1dbb5181c327 -r 9457a20156db fasta_formatter.xml
--- a/fasta_formatter.xml Tue Dec 03 12:36:12 2013 -0500
+++ b/fasta_formatter.xml Mon Oct 12 10:15:31 2015 -0400
@@ -1,48 +1,49 @@
- formatter
+ formatter
fastx_toolkit
-
- zcat -f '$input' | fasta_formatter -w $width -o $output
-
-
-
-
-
+ So this XML tool only changes the width (line-wrapping) of a
+ FASTA file.
+ -->
+
+
+
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
**What it does**
This tool re-formats a FASTA file, changing the width of the nucleotides lines.
-
+
**TIP:** Outputting a single line (with **width = 0**) can be useful for scripting (with **grep**, **awk**, and **perl**). Every odd line is a sequence identifier, and every even line is a nucleotides line.
--------
@@ -84,6 +85,5 @@
This tool is based on `FASTX-toolkit`__ by Assaf Gordon.
.. __: http://hannonlab.cshl.edu/fastx_toolkit/
-
-
+
diff -r 1dbb5181c327 -r 9457a20156db tool_dependencies.xml
--- a/tool_dependencies.xml Tue Dec 03 12:36:12 2013 -0500
+++ b/tool_dependencies.xml Mon Oct 12 10:15:31 2015 -0400
@@ -1,6 +1,6 @@
-
+