Mercurial > repos > devteam > fasta_nucleotide_changer
comparison fasta_nucleotide_changer.xml @ 1:2f868bfbe9de
Removed excess version attributes.
| author | Dave Bouvier <dave@bx.psu.edu> |
|---|---|
| date | Tue, 03 Dec 2013 12:36:13 -0500 |
| parents | 4b41e3076a50 |
| children | f81d4362b6c1 |
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| 0:4b41e3076a50 | 1:2f868bfbe9de |
|---|---|
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.0.13">fastx_toolkit</requirement> | 4 <requirement type="package" version="0.0.13">fastx_toolkit</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command>zcat -f '$input' | fasta_nucleotide_changer -$mode -v -o $output</command> | 6 <command>zcat -f '$input' | fasta_nucleotide_changer -$mode -v -o $output</command> |
| 7 <inputs> | 7 <inputs> |
| 8 <param format="fasta" version="1.0.0" name="input" type="data" label="Library to convert" /> | 8 <param format="fasta" name="input" type="data" label="Library to convert" /> |
| 9 | 9 |
| 10 <param version="1.0.0" name="mode" type="select" label="Convert"> | 10 <param name="mode" type="select" label="Convert"> |
| 11 <option value="d">RNA to DNA (U to T)</option> | 11 <option value="d">RNA to DNA (U to T)</option> |
| 12 <option value="r">DNA to RNA (T to U)</option> | 12 <option value="r">DNA to RNA (T to U)</option> |
| 13 </param> | 13 </param> |
| 14 </inputs> | 14 </inputs> |
| 15 | 15 |
| 16 <!-- | 16 <!-- |
| 17 Functional tests with param value starting with - fail. | 17 Functional tests with param value starting with - fail. |
| 18 --> | 18 --> |
| 19 <tests> | 19 <tests> |
| 20 <test> | 20 <test> |
| 21 <param version="1.0.0" name="input" value="fasta_nuc_changer1.fasta" /> | 21 <param name="input" value="fasta_nuc_changer1.fasta" /> |
| 22 <param version="1.0.0" name="mode" value="r" /> | 22 <param name="mode" value="r" /> |
| 23 <output version="1.0.0" name="output" file="fasta_nuc_change1.out" /> | 23 <param name="output" file="fasta_nuc_change1.out" /> |
| 24 </test> | 24 </test> |
| 25 <test> | 25 <test> |
| 26 <param version="1.0.0" name="input" value="fasta_nuc_changer2.fasta" /> | 26 <param name="input" value="fasta_nuc_changer2.fasta" /> |
| 27 <param version="1.0.0" name="mode" value="d" /> | 27 <param name="mode" value="d" /> |
| 28 <output version="1.0.0" name="output" file="fasta_nuc_change2.out" /> | 28 <param name="output" file="fasta_nuc_change2.out" /> |
| 29 </test> | 29 </test> |
| 30 </tests> | 30 </tests> |
| 31 | 31 |
| 32 <outputs> | 32 <outputs> |
| 33 <data format="input" version="1.0.0" name="output" metadata_source="input" /> | 33 <data format="input" name="output" metadata_source="input" /> |
| 34 </outputs> | 34 </outputs> |
| 35 | 35 |
| 36 <help> | 36 <help> |
| 37 **What it does** | 37 **What it does** |
| 38 | 38 |