Mercurial > repos > devteam > fasta_to_tabular
comparison fasta_to_tabular.xml @ 1:7e801ab2b70e draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_to_tabular commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:14:09 -0500 |
| parents | 9d189d08f2ad |
| children | 091edad7622f |
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| 0:9d189d08f2ad | 1:7e801ab2b70e |
|---|---|
| 1 <tool id="fasta2tab" name="FASTA-to-Tabular" version="1.1.0"> | 1 <tool id="fasta2tab" name="FASTA-to-Tabular" version="1.1.0"> |
| 2 <description>converter</description> | 2 <description>converter</description> |
| 3 <command interpreter="python">fasta_to_tabular.py $input $output $keep_first $descr_columns</command> | 3 <command interpreter="python">fasta_to_tabular.py $input $output $keep_first $descr_columns</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="input" type="data" format="fasta" label="Convert these sequences"/> | 5 <param name="input" type="data" format="fasta" label="Convert these sequences"/> |
| 6 <param name="descr_columns" type="integer" size="2" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> | 6 <param name="descr_columns" type="integer" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> |
| 7 <validator type="in_range" min="1" /> | 7 <validator type="in_range" min="1" /> |
| 8 </param> | 8 </param> |
| 9 <param name="keep_first" type="integer" size="5" value="0" label="How many title characters to keep?" help="Applies only to the first column taken from the title string ('0' = keep the whole thing), useful when your sequence identifiers are all the same length."> | 9 <param name="keep_first" type="integer" value="0" label="How many title characters to keep?" help="Applies only to the first column taken from the title string ('0' = keep the whole thing), useful when your sequence identifiers are all the same length."> |
| 10 <validator type="in_range" min="0" /> | 10 <validator type="in_range" min="0" /> |
| 11 </param> | 11 </param> |
| 12 </inputs> | 12 </inputs> |
| 13 <outputs> | 13 <outputs> |
| 14 <data name="output" format="tabular"/> | 14 <data name="output" format="tabular"/> |