Mercurial > repos > devteam > fastq_manipulation
comparison fastq_manipulation.xml @ 5:e30352e889fe draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_manipulation commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 10:34:44 +0000 |
| parents | 5b87038565bb |
| children |
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| 4:5b87038565bb | 5:e30352e889fe |
|---|---|
| 1 <tool id="fastq_manipulation" name="Manipulate FASTQ" version="@TOOL_VERSION@"> | 1 <tool id="fastq_manipulation" name="Manipulate FASTQ" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <options sanitize="false" /> | |
| 3 <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters --> | 2 <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters --> |
| 4 <description>reads on various attributes</description> | 3 <description>reads on various attributes</description> |
| 5 <macros> | 4 <macros> |
| 6 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 7 </macros> | 6 </macros> |
| 8 <expand macro="requirements"/> | 7 <options sanitize="false" /> |
| 9 <edam_topics> | 8 <edam_topics> |
| 10 <edam_topic>topic_0622</edam_topic> | 9 <edam_topic>topic_0622</edam_topic> |
| 11 </edam_topics> | 10 </edam_topics> |
| 12 <edam_operations> | 11 <edam_operations> |
| 13 <edam_operation>operation_0233</edam_operation> | 12 <edam_operation>operation_0233</edam_operation> |
| 14 </edam_operations> | 13 </edam_operations> |
| 14 <expand macro="requirements"/> | |
| 15 <command><![CDATA[ | 15 <command><![CDATA[ |
| 16 gx-fastq-manipulation '$input_file' '$fastq_manipulation_file' '$output_file' '$output_file.files_path' '${input_file.extension[len('fastq'):]}' | 16 gx-fastq-manipulation '$input_file' '$fastq_manipulation_file' '$output_file' '$output_file.files_path' '${input_file.extension[len('fastq'):]}' |
| 17 ]]></command> | 17 ]]></command> |
| 18 <configfiles> | 18 <configfiles> |
| 19 <configfile name="fastq_manipulation_file"><![CDATA[##create an importable module | 19 <configfile name="fastq_manipulation_file"><![CDATA[##create an importable module |