# HG changeset patch
# User devteam
# Date 1447263670 18000
# Node ID bb07615a5b6aa7d7fad4bc7c6bc05ec550d838ac
# Parent  5d1e9e13e8db778d88035f13e2f71e3a7487bce5
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_manipulation commit a1517c9d22029095120643bbe2c8fa53754dd2b7

diff -r 5d1e9e13e8db -r bb07615a5b6a fastq_manipulation.xml
--- a/fastq_manipulation.xml	Mon Jan 27 09:26:01 2014 -0500
+++ b/fastq_manipulation.xml	Wed Nov 11 12:41:10 2015 -0500
@@ -421,12 +421,8 @@
 3. Click **Add new Manipulate Reads**, change **Manipulate Reads on** to "Sequence Content", set **Sequence Manipulation Type** to "String Translate" and set **From** to "0123." and **To** to "ACGTN".
 4. Click Execute. The new history item will contained double-encoded psuedo-nucleotide space reads.
 
-------
-
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_
-
-
 </help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btq281</citation>
+    </citations>
 </tool>
diff -r 5d1e9e13e8db -r bb07615a5b6a tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jan 27 09:26:01 2014 -0500
+++ b/tool_dependencies.xml	Wed Nov 11 12:41:10 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>