Mercurial > repos > devteam > fastq_paired_end_deinterlacer
comparison fastq_paired_end_deinterlacer.xml @ 3:03d57fea6482 draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer commit 31edb920789fbd080260f853bc856be72fa7cfa8"
| author | devteam |
|---|---|
| date | Fri, 01 Nov 2019 13:24:38 -0400 |
| parents | b7ce72b00e62 |
| children | f3936d0632cb |
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| 2:b7ce72b00e62 | 3:03d57fea6482 |
|---|---|
| 1 <tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="1.1.2"> | 1 <tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="1.1.2"> |
| 2 <description>on paired end reads</description> | 2 <description>on paired end reads</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <edam_topics> | |
| 7 <edam_topic>topic_0622</edam_topic> | |
| 8 </edam_topics> | |
| 9 <edam_operations> | |
| 10 <edam_operation>operation_3359</edam_operation> | |
| 11 </edam_operations> | |
| 6 <command><![CDATA[ | 12 <command><![CDATA[ |
| 7 gx-fastq-paired-end-deinterlacer '$input_file' '${input_file.extension[len('fastq'):]}' '$output1_pairs_file' '$output2_pairs_file' '$output1_singles_file' '$output2_singles_file' | 13 gx-fastq-paired-end-deinterlacer '$input_file' '${input_file.extension[len('fastq'):]}' '$output1_pairs_file' '$output2_pairs_file' '$output1_singles_file' '$output2_singles_file' |
| 8 ]]></command> | 14 ]]></command> |
| 9 <inputs> | 15 <inputs> |
| 10 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> | 16 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> |