Mercurial > repos > devteam > fastq_paired_end_interlacer

diff fastq_paired_end_interlacer.xml @ 6:b41c2c1bcfbf draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
author iuc
date Fri, 04 Oct 2024 10:35:03 +0000
parents 2ccb8dcabddc
children
line wrap: on
line diff
--- a/fastq_paired_end_interlacer.xml	Wed Feb 19 12:33:00 2020 -0500
+++ b/fastq_paired_end_interlacer.xml	Fri Oct 04 10:35:03 2024 +0000
@@ -1,14 +1,14 @@
-<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0.1+galaxy0">
+<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>on paired end reads</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
     <edam_topics>
         <edam_topic>topic_0622</edam_topic>
     </edam_topics>
     <edam_operations>
         <edam_operation>operation_3436</edam_operation>
     </edam_operations>
-    <macros>
-        <import>macros.xml</import>
-    </macros>
     <expand macro="requirements"/>
     <command><![CDATA[
 gx-fastq-paired-end-interlacer
@@ -53,35 +53,35 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="reads_selector" value="paired" />
             <param name="input1_file" value="paired_end_1.fastqsanger" ftype="fastqsanger" />
             <param name="input2_file" value="paired_end_2.fastqsanger" ftype="fastqsanger" />
             <output name="outfile_pairs" file="paired_end_merged.fastqsanger" ftype="fastqsanger" />
             <output name="outfile_singles" file="paired_end_merged_singles.fastqsanger" ftype="fastqsanger" />
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="reads_selector" value="paired" />
             <param name="input1_file" value="paired_end_1_errors.fastqsanger" ftype="fastqsanger" />
             <param name="input2_file" value="paired_end_2_errors.fastqsanger" ftype="fastqsanger" />
             <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger" />
             <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger" />
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="reads_selector" value="paired" />
             <param name="input1_file" value="paired_end_1_errors.fastqsanger.gz" ftype="fastqsanger.gz" />
             <param name="input2_file" value="paired_end_2_errors.fastqsanger.gz" ftype="fastqsanger.gz" />
             <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
             <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="reads_selector" value="paired" />
             <param name="input1_file" value="paired_end_1_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" />
             <param name="input2_file" value="paired_end_2_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" />
             <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
             <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="reads_selector" value="paired_collection" />
             <param name="reads_coll">
                 <collection type="paired">