# HG changeset patch # User iuc # Date 1728038103 0 # Node ID b41c2c1bcfbffac8e858a4214f0bb77ebdbae6d3 # Parent 2ccb8dcabddcf02b1b4d3785c41aead9bad31715 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845 diff -r 2ccb8dcabddc -r b41c2c1bcfbf fastq_paired_end_interlacer.xml --- a/fastq_paired_end_interlacer.xml Wed Feb 19 12:33:00 2020 -0500 +++ b/fastq_paired_end_interlacer.xml Fri Oct 04 10:35:03 2024 +0000 @@ -1,14 +1,14 @@ -<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0.1+galaxy0"> +<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>on paired end reads</description> + <macros> + <import>macros.xml</import> + </macros> <edam_topics> <edam_topic>topic_0622</edam_topic> </edam_topics> <edam_operations> <edam_operation>operation_3436</edam_operation> </edam_operations> - <macros> - <import>macros.xml</import> - </macros> <expand macro="requirements"/> <command><![CDATA[ gx-fastq-paired-end-interlacer @@ -53,35 +53,35 @@ </data> </outputs> <tests> - <test> + <test expect_num_outputs="2"> <param name="reads_selector" value="paired" /> <param name="input1_file" value="paired_end_1.fastqsanger" ftype="fastqsanger" /> <param name="input2_file" value="paired_end_2.fastqsanger" ftype="fastqsanger" /> <output name="outfile_pairs" file="paired_end_merged.fastqsanger" ftype="fastqsanger" /> <output name="outfile_singles" file="paired_end_merged_singles.fastqsanger" ftype="fastqsanger" /> </test> - <test> + <test expect_num_outputs="2"> <param name="reads_selector" value="paired" /> <param name="input1_file" value="paired_end_1_errors.fastqsanger" ftype="fastqsanger" /> <param name="input2_file" value="paired_end_2_errors.fastqsanger" ftype="fastqsanger" /> <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger" /> <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger" /> </test> - <test> + <test expect_num_outputs="2"> <param name="reads_selector" value="paired" /> <param name="input1_file" value="paired_end_1_errors.fastqsanger.gz" ftype="fastqsanger.gz" /> <param name="input2_file" value="paired_end_2_errors.fastqsanger.gz" ftype="fastqsanger.gz" /> <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> </test> - <test> + <test expect_num_outputs="2"> <param name="reads_selector" value="paired" /> <param name="input1_file" value="paired_end_1_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" /> <param name="input2_file" value="paired_end_2_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" /> <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> </test> - <test> + <test expect_num_outputs="2"> <param name="reads_selector" value="paired_collection" /> <param name="reads_coll"> <collection type="paired"> diff -r 2ccb8dcabddc -r b41c2c1bcfbf macros.xml --- a/macros.xml Wed Feb 19 12:33:00 2020 -0500 +++ b/macros.xml Fri Oct 04 10:35:03 2024 +0000 @@ -1,5 +1,7 @@ <macros> <token name="@TOOL_VERSION@">1.1.5</token> + <token name="@VERSION_SUFFIX@">2</token> + <token name="@PROFILE@">23.1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement>