Mercurial > repos > devteam > fastq_paired_end_joiner
comparison fastq_paired_end_joiner.xml @ 5:822cc1e6274e draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner commit 28c441e8aa66a55d276b0f6325d34086eb715872
| author | devteam |
|---|---|
| date | Sat, 07 Oct 2017 09:58:53 -0400 |
| parents | 080a058abf1e |
| children | 09a2199cd356 |
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| 4:080a058abf1e | 5:822cc1e6274e |
|---|---|
| 1 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.0"> | 1 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1"> |
| 2 <description>on paired end reads</description> | 2 <description>on paired end reads</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command><![CDATA[ | 6 <command><![CDATA[ |
| 7 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' | 7 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' |
| 8 ]]></command> | 8 ]]></command> |
| 9 <inputs> | 9 <inputs> |
| 21 <tests> | 21 <tests> |
| 22 <test> | 22 <test> |
| 23 <param name="input1_file" value="split_pair_reads_1.fastqsanger" ftype="fastqsanger" /> | 23 <param name="input1_file" value="split_pair_reads_1.fastqsanger" ftype="fastqsanger" /> |
| 24 <param name="input2_file" value="split_pair_reads_2.fastqsanger" ftype="fastqsanger" /> | 24 <param name="input2_file" value="split_pair_reads_2.fastqsanger" ftype="fastqsanger" /> |
| 25 <output name="output_file" file="3.fastqsanger" ftype="fastqsanger" /> | 25 <output name="output_file" file="3.fastqsanger" ftype="fastqsanger" /> |
| 26 </test> | |
| 27 <test> | |
| 28 <param name="input1_file" value="split_pair_reads_1.fastqsanger.gz" ftype="fastqsanger.gz" /> | |
| 29 <param name="input2_file" value="split_pair_reads_2.fastqsanger.gz" ftype="fastqsanger.gz" /> | |
| 30 <output name="output_file" file="3.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> | |
| 31 </test> | |
| 32 <test> | |
| 33 <param name="input1_file" value="split_pair_reads_1.fastqsanger.bz2" ftype="fastqsanger.bz2" /> | |
| 34 <param name="input2_file" value="split_pair_reads_2.fastqsanger.bz2" ftype="fastqsanger.bz2" /> | |
| 35 <output name="output_file" file="3.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> | |
| 26 </test> | 36 </test> |
| 27 </tests> | 37 </tests> |
| 28 <help><![CDATA[ | 38 <help><![CDATA[ |
| 29 **What it does** | 39 **What it does** |
| 30 | 40 |