Mercurial > repos > devteam > fastq_paired_end_joiner
comparison fastq_paired_end_joiner.xml @ 8:8d958759cf2a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 10:35:09 +0000 |
| parents | c885369b207b |
| children |
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| 7:c885369b207b | 8:8d958759cf2a |
|---|---|
| 1 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1+galaxy0"> | 1 <!-- TODO as soon as possible adapt the TOOL VERSION macro token .. so far only bump minor versions --> |
| 2 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1+galaxy1" profile="@PROFILE@"> | |
| 2 <description>on paired end reads</description> | 3 <description>on paired end reads</description> |
| 3 <macros> | 4 <macros> |
| 4 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 5 </macros> | 6 </macros> |
| 6 <expand macro="requirements"/> | |
| 7 <edam_topics> | 7 <edam_topics> |
| 8 <edam_topic>topic_0622</edam_topic> | 8 <edam_topic>topic_0622</edam_topic> |
| 9 </edam_topics> | 9 </edam_topics> |
| 10 <edam_operations> | 10 <edam_operations> |
| 11 <edam_operation>operation_3436</edam_operation> | 11 <edam_operation>operation_3436</edam_operation> |
| 12 </edam_operations> | 12 </edam_operations> |
| 13 <expand macro="requirements"/> | |
| 13 <command><![CDATA[ | 14 <command><![CDATA[ |
| 14 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' | 15 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' |
| 15 ]]></command> | 16 ]]></command> |
| 16 <inputs> | 17 <inputs> |
| 17 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="Left-hand Reads" /> | 18 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="Left-hand Reads" /> |