Mercurial > repos > devteam > fastq_paired_end_splitter
comparison fastq_paired_end_splitter.xml @ 3:35e38452bb3f draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_splitter commit 31edb920789fbd080260f853bc856be72fa7cfa8"
| author | devteam |
|---|---|
| date | Fri, 01 Nov 2019 13:25:29 -0400 |
| parents | 9bbe5b7ffa12 |
| children | 249c8393f2d4 |
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| 2:9bbe5b7ffa12 | 3:35e38452bb3f |
|---|---|
| 1 <tool id="fastq_paired_end_splitter" name="FASTQ splitter" version="1.1.1"> | 1 <tool id="fastq_paired_end_splitter" name="FASTQ splitter" version="1.1.1"> |
| 2 <description>on joined paired end reads</description> | 2 <description>on joined paired end reads</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <edam_topics> | |
| 7 <edam_topic>topic_0622</edam_topic> | |
| 8 </edam_topics> | |
| 9 <edam_operations> | |
| 10 <edam_operation>operation_3359</edam_operation> | |
| 11 </edam_operations> | |
| 6 <command><![CDATA[ | 12 <command><![CDATA[ |
| 7 gx-fastq-paired-end-splitter '$input1_file' '${input1_file.extension[len('fastq'):]}' '$output1_file' '$output2_file' | 13 gx-fastq-paired-end-splitter '$input1_file' '${input1_file.extension[len('fastq'):]}' '$output1_file' '$output2_file' |
| 8 ]]></command> | 14 ]]></command> |
| 9 <inputs> | 15 <inputs> |
| 10 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> | 16 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> |