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comparison fastq_quality_filter.xml @ 1:57adb07cccfc

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Removed excess version attributes.
author Dave Bouvier <dave@bx.psu.edu>
date Tue, 03 Dec 2013 12:36:13 -0500
parents b145b9b26648
children e41385662e5e
comparison
equal deleted inserted replaced
0:b145b9b26648 1:57adb07cccfc
8 -Q 33 8 -Q 33
9 #end if 9 #end if
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param format="fastqsolexa,fastqsanger" version="1.0.0" name="input" type="data" label="Library to filter" /> 13 <param format="fastqsolexa,fastqsanger" name="input" type="data" label="Library to filter" />
14 14
15 <param version="1.0.0" name="quality" size="4" type="integer" value="20"> 15 <param name="quality" size="4" type="integer" value="20">
16 <label>Quality cut-off value</label> 16 <label>Quality cut-off value</label>
17 </param> 17 </param>
18 18
19 <param version="1.0.0" name="percent" size="4" type="integer" value="90"> 19 <param name="percent" size="4" type="integer" value="90">
20 <label>Percent of bases in sequence that must have quality equal to / higher than cut-off value</label> 20 <label>Percent of bases in sequence that must have quality equal to / higher than cut-off value</label>
21 </param> 21 </param>
22 </inputs> 22 </inputs>
23 23
24 <tests> 24 <tests>
25 <test> 25 <test>
26 <!-- Test1: 100% of bases with quality 33 or higher (pretty steep requirement...) --> 26 <!-- Test1: 100% of bases with quality 33 or higher (pretty steep requirement...) -->
27 <param version="1.0.0" name="input" value="fastq_qual_filter1.fastq" ftype="fastqsolexa" /> 27 <param name="input" value="fastq_qual_filter1.fastq" ftype="fastqsolexa" />
28 <param version="1.0.0" name="quality" value="33"/> 28 <param name="quality" value="33"/>
29 <param version="1.0.0" name="percent" value="100"/> 29 <param name="percent" value="100"/>
30 <output version="1.0.0" name="output" file="fastq_qual_filter1a.out" /> 30 <param name="output" file="fastq_qual_filter1a.out" />
31 </test> 31 </test>
32 <test> 32 <test>
33 <!-- Test2: 80% of bases with quality 20 or higher --> 33 <!-- Test2: 80% of bases with quality 20 or higher -->
34 <param version="1.0.0" name="input" value="fastq_qual_filter1.fastq" ftype="fastqsolexa"/> 34 <param name="input" value="fastq_qual_filter1.fastq" ftype="fastqsolexa"/>
35 <param version="1.0.0" name="quality" value="20"/> 35 <param name="quality" value="20"/>
36 <param version="1.0.0" name="percent" value="80"/> 36 <param name="percent" value="80"/>
37 <output version="1.0.0" name="output" file="fastq_qual_filter1b.out" /> 37 <param name="output" file="fastq_qual_filter1b.out" />
38 </test> 38 </test>
39 </tests> 39 </tests>
40 40
41 <outputs> 41 <outputs>
42 <data format="input" version="1.0.0" name="output" metadata_source="input" /> 42 <data format="input" name="output" metadata_source="input" />
43 </outputs> 43 </outputs>
44 44
45 <help> 45 <help>
46 **What it does** 46 **What it does**
47 47