Mercurial > repos > devteam > fastq_quality_filter
comparison fastq_quality_filter.xml @ 5:ce9cd02d5b88 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_filter commit 4c002e52261da2e7609735883d91fa1610ce6ce7"
| author | iuc |
|---|---|
| date | Thu, 30 Jan 2020 13:29:21 -0500 |
| parents | 7b4468117008 |
| children | 64e9a6afdd0c |
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| 4:7b4468117008 | 5:ce9cd02d5b88 |
|---|---|
| 1 <tool id="cshl_fastq_quality_filter" version="1.0.2" name="Filter by quality"> | 1 <tool id="cshl_fastq_quality_filter" version="1.0.2+galaxy0" name="Filter by quality"> |
| 2 <description></description> | 2 <description></description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements"> |
| 7 <requirement type="package" version="1.0.8">bzip2</requirement> | |
| 8 </expand> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 8 @CATS@ fastq_quality_filter | 10 @CATS@ fastq_quality_filter |
| 9 -q $quality | 11 -q $quality |
| 10 -p $percent | 12 -p $percent |
| 11 -v | 13 -v |
| 12 -o '$output' | |
| 13 @FQQUAL@ | 14 @FQQUAL@ |
| 14 @GZIP@ | 15 @GZIP@ > '$output' |
| 15 ]]></command> | 16 ]]></command> |
| 16 | 17 |
| 17 <inputs> | 18 <inputs> |
| 18 <expand macro="fastq_input" /> | 19 <expand macro="fastq_input" /> |
| 19 | 20 |