Mercurial > repos > devteam > fastq_stats
comparison fastq_stats.xml @ 3:b1cea1b2fcd0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_stats commit 31edb920789fbd080260f853bc856be72fa7cfa8"
| author | devteam |
|---|---|
| date | Fri, 01 Nov 2019 13:26:00 -0400 |
| parents | e2cf940128d5 |
| children | f0e7deab6518 |
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| 2:e2cf940128d5 | 3:b1cea1b2fcd0 |
|---|---|
| 1 <tool id="fastq_stats" name="FASTQ Summary Statistics" version="1.1.1"> | 1 <tool id="fastq_stats" name="FASTQ Summary Statistics" version="1.1.1"> |
| 2 <description>by column</description> | 2 <description>by column</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <edam_topics> | |
| 7 <edam_topic>topic_0622</edam_topic> | |
| 8 </edam_topics> | |
| 9 <edam_operations> | |
| 10 <edam_operation>operation_3180</edam_operation> | |
| 11 </edam_operations> | |
| 6 <command><![CDATA[ | 12 <command><![CDATA[ |
| 7 gx-fastq-stats '$input_file' '$output_file' '${input_file.extension[len('fastq'):]}' | 13 gx-fastq-stats '$input_file' '$output_file' '${input_file.extension[len('fastq'):]}' |
| 8 ]]></command> | 14 ]]></command> |
| 9 <inputs> | 15 <inputs> |
| 10 <param name="input_file" type="data" format="fastqsanger,fastqillumina,fastqsolexa,fastqcssanger,fastqsanger.gz,fastqillumina.gz,fastqsolexa.gz,fastqcssanger.gz,fastqsanger.bz2,fastqillumina.bz2,fastqsolexa.bz2,fastqcssanger.bz2" label="FASTQ File"/> | 16 <param name="input_file" type="data" format="fastqsanger,fastqillumina,fastqsolexa,fastqcssanger,fastqsanger.gz,fastqillumina.gz,fastqsolexa.gz,fastqcssanger.gz,fastqsanger.bz2,fastqillumina.bz2,fastqsolexa.bz2,fastqcssanger.bz2" label="FASTQ File"/> |