comparison fastq_stats.xml @ 1:daaf552153fe draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_stats commit a1517c9d22029095120643bbe2c8fa53754dd2b7

0:9b7b4e0ca9db

      <param name="input_file" value="fastq_stats1.fastq" ftype="fastqsanger" />
      <output name="output_file" file="fastq_stats_1_out.tabular" />
    </test>
  </tests>
  <help>
This tool creates summary statistics on a FASTQ file. 

.. class:: infomark

**TIP:** This statistics report can be used as input for the **Boxplot** tools.

Adapter bases in color space reads are excluded from statistics.

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**Citation**

If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_


  </help>
</tool>

1:daaf552153fe

      <param name="input_file" value="fastq_stats1.fastq" ftype="fastqsanger" />
      <output name="output_file" file="fastq_stats_1_out.tabular" />
    </test>
  </tests>
  <help>
**What is does**

This tool creates summary statistics on a FASTQ file. 

.. class:: infomark

**TIP:** This statistics report can be used as input for the **Boxplot** tools.

Adapter bases in color space reads are excluded from statistics.

------

  </help>
  
  <citations>
    <citation type="doi">10.1093/bioinformatics/btq281</citation>
  </citations>
  
</tool>