Mercurial > repos > devteam > fastq_to_tabular
changeset 1:7da7ddea4425 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_to_tabular commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:42:45 -0500 |
| parents | bc9269529e88 |
| children | ccf4e1d1fcbe |
| files | fastq_to_tabular.xml tool_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/fastq_to_tabular.xml Mon Jan 27 09:28:21 2014 -0500 +++ b/fastq_to_tabular.xml Wed Nov 11 12:42:45 2015 -0500 @@ -6,7 +6,7 @@ <command interpreter="python">fastq_to_tabular.py '$input_file' '$output_file' $descr_columns '${input_file.extension[len( 'fastq' ):]}'</command> <inputs> <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa" label="FASTQ file to convert" /> - <param name="descr_columns" type="integer" size="2" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> + <param name="descr_columns" type="integer" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> <validator type="in_range" min="1" /> </param> </inputs> @@ -95,10 +95,10 @@ ------ -**Citation** - -If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_ - - </help> + + <citations> + <citation type="doi">10.1093/bioinformatics/btq281</citation> + </citations> + </tool>
--- a/tool_dependencies.xml Mon Jan 27 09:28:21 2014 -0500 +++ b/tool_dependencies.xml Wed Nov 11 12:42:45 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="galaxy_sequence_utils" version="1.0.0"> - <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>