# HG changeset patch
# User devteam
# Date 1447263778 18000
# Node ID e0cfb5a703cebdb42d57812e6921bde397a61e11
# Parent  0b9feb0ed6286666d885fcb38b10e203cee0d537
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit a1517c9d22029095120643bbe2c8fa53754dd2b7

diff -r 0b9feb0ed628 -r e0cfb5a703ce fastq_trimmer.xml
--- a/fastq_trimmer.xml	Mon Jan 27 09:27:32 2014 -0500
+++ b/fastq_trimmer.xml	Wed Nov 11 12:42:58 2015 -0500
@@ -81,6 +81,8 @@
     </test>
   </tests>
   <help>
+**What is does**
+    
 This tool allows you to trim the ends of reads.
 
 You can specify either absolute or percent-based offsets. Offsets are calculated, starting at 0, from the respective end to be trimmed. When using the percent-based method, offsets are rounded to the nearest integer. 
@@ -114,10 +116,10 @@
 
 ------
 
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. &lt;http://www.ncbi.nlm.nih.gov/pubmed/20562416&gt;`_
-
-
   </help>
+  
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btq281</citation>
+  </citations>
+  
 </tool>
diff -r 0b9feb0ed628 -r e0cfb5a703ce tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jan 27 09:27:32 2014 -0500
+++ b/tool_dependencies.xml	Wed Nov 11 12:42:58 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>