Mercurial > repos > devteam > fastq_trimmer

changeset 3:2d0d13b0b0f1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit bb546ea5ff3b35ea76feb0c26470e7b422d2d493
author devteam
date Tue, 21 Nov 2017 15:43:45 -0500
parents 430b9da91435
children 33794bdb7fe0
files fastq_trimmer.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_trimmer.xml	Sat Sep 30 13:55:56 2017 -0400
+++ b/fastq_trimmer.xml	Tue Nov 21 15:43:45 2017 -0500
@@ -7,7 +7,7 @@
 gx-fastq-trimmer '$input_file' '$output_file' ${offset_type['left_column_offset']} ${offset_type['right_column_offset']} ${offset_type['base_offset_type']} '${input_file.extension[len('fastq'):]}' $keep_zero_length
     ]]></command>
     <inputs>
-        <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz" label="FASTQ file"/>
+        <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file"/>
         <conditional name="offset_type">
             <param name="base_offset_type" type="select" label="Define Base Offsets as" help="Use Absolute for fixed length reads (Illumina, SOLiD)&lt;br&gt;Use Percentage for variable length reads (Roche/454)">
                 <option value="offsets_absolute" selected="true">Absolute Values</option>