Mercurial > repos > devteam > fastq_trimmer_by_quality
comparison fastq_trimmer_by_quality.xml @ 4:8050e091e99b draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastq_trimmer_by_quality commit cd1ed08574b749eee2a3f6e6151dbb0c8ca15bbf"
| author | devteam |
|---|---|
| date | Sun, 01 Mar 2020 07:25:19 -0500 |
| parents | c64d534a763c |
| children |
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| 3:c64d534a763c | 4:8050e091e99b |
|---|---|
| 1 <tool id="fastq_quality_trimmer" name="FASTQ Quality Trimmer" version="1.1.1"> | 1 <tool id="fastq_quality_trimmer" name="FASTQ Quality Trimmer" version="1.1.5" profile="16.04"> |
| 2 <description>by sliding window</description> | 2 <description>by sliding window</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.1.5">galaxy_sequence_utils</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command><![CDATA[ | 6 <command><![CDATA[ |
| 7 gx-fastq-trimmer-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s $window_size | 7 gx-fastq-trimmer-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s $window_size |
| 8 -t $step_size -e $trim_ends -a $aggregation_action -x $exclude_count -c '$score_comparison' -q $quality_score | 8 -t $step_size -e $trim_ends -a $aggregation_action -x $exclude_count -c '$score_comparison' -q $quality_score |
| 9 #if $keep_zero_length: | 9 #if $keep_zero_length: |