comparison rgFastQC.py @ 7:3fdc1a74d866 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b

6:28d39af2dd06

    opts, args = op.parse_args()
    
    assert opts.input != None
    assert opts.inputfilename != None
    assert opts.htmloutput != None
    assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable
    if not os.path.exists(opts.outputdir): 
        os.makedirs(opts.outputdir)
    
    fastqc_runner = FastQCRunner(opts)
    fastqc_runner.run_fastqc()

7:3fdc1a74d866

    opts, args = op.parse_args()
    
    assert opts.input != None
    assert opts.inputfilename != None
    assert opts.htmloutput != None
    if not os.path.exists(opts.outputdir): 
        os.makedirs(opts.outputdir)
    
    fastqc_runner = FastQCRunner(opts)
    fastqc_runner.run_fastqc()