comparison rgFastQC.xml @ 7:3fdc1a74d866 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b

6:28d39af2dd06

<tool id="fastqc" name="FastQC" version="0.64">
    <description>Read Quality reports</description>
    <requirements>
        <requirement type="package" version="0.11.4">FastQC</requirement>
    </requirements>
    <stdio>

        -d "$html_file.files_path"
        -o "$html_file"
        -t "$text_file"
        -f "$input_file.ext"
        -j "$input_file.name"
        -e "\$FASTQC_JAR_PATH/fastqc"
        #if $contaminants.dataset and str($contaminants) > ''
            -c "$contaminants"
        #end if
        #if $limits.dataset and str($limits) > ''
            -l "$limits"

7:3fdc1a74d866

<tool id="fastqc" name="FastQC" version="0.65">
    <description>Read Quality reports</description>
    <requirements>
        <requirement type="package" version="0.11.4">FastQC</requirement>
    </requirements>
    <stdio>

        -d "$html_file.files_path"
        -o "$html_file"
        -t "$text_file"
        -f "$input_file.ext"
        -j "$input_file.name"
        #if $contaminants.dataset and str($contaminants) > ''
            -c "$contaminants"
        #end if
        #if $limits.dataset and str($limits) > ''
            -l "$limits"