Mercurial > repos > devteam > fastqc

comparison test-data/fastqc_data_adapters.txt @ 23:5ec9f6bceaee draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 9aa395df821f0d3607867c83536ac97f9ffe8b29
author iuc
date Thu, 08 Jun 2023 20:02:11 +0000
parents 3d0c7bdf12f5
children
comparison
equal deleted inserted replaced
22:3d0c7bdf12f5 23:5ec9f6bceaee
1 ##FastQC 0.11.9 1 ##FastQC 0.12.1
2 >>Basic Statistics pass 2 >>Basic Statistics pass
3 #Measure Value 3 #Measure Value
4 Filename 1000trimmed_fastq 4 Filename 1000trimmed_fastq
5 File type Conventional base calls 5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9 6 Encoding Sanger / Illumina 1.9
7 Total Sequences 4905 7 Total Sequences 4905
8 Total Bases 254.2 kbp
8 Sequences flagged as poor quality 0 9 Sequences flagged as poor quality 0
9 Sequence length 1-108 10 Sequence length 1-108
10 %GC 40 11 %GC 40
11 >>END_MODULE 12 >>END_MODULE
12 >>Per base sequence quality pass 13 >>Per base sequence quality pass
342 100-104 0.0 343 100-104 0.0
343 105-109 1325.0 344 105-109 1325.0
344 >>END_MODULE 345 >>END_MODULE
345 >>Sequence Duplication Levels pass 346 >>Sequence Duplication Levels pass
346 #Total Deduplicated Percentage 98.73598369011212 347 #Total Deduplicated Percentage 98.73598369011212
347 #Duplication Level Percentage of deduplicated Percentage of total 348 #Duplication Level Percentage of total
348 1 99.44249432170142 98.1855249745158 349 1 98.1855249745158
349 2 0.47491224447656405 0.9378185524974516 350 2 0.9378185524974516
350 3 0.041296716911005574 0.12232415902140673 351 3 0.12232415902140673
351 4 0.020648358455502787 0.08154943934760449 352 4 0.08154943934760449
352 5 0.0 0.0 353 5 0.0
353 6 0.0 0.0 354 6 0.0
354 7 0.0 0.0 355 7 0.0
355 8 0.0 0.0 356 8 0.0
356 9 0.0 0.0 357 9 0.0
357 >10 0.020648358455502787 0.672782874617737 358 >10 0.672782874617737
358 >50 0.0 0.0 359 >50 0.0
359 >100 0.0 0.0 360 >100 0.0
360 >500 0.0 0.0 361 >500 0.0
361 >1k 0.0 0.0 362 >1k 0.0
362 >5k 0.0 0.0 363 >5k 0.0
363 >10k+ 0.0 0.0 364 >10k+ 0.0
364 >>END_MODULE 365 >>END_MODULE
365 >>Overrepresented sequences warn 366 >>Overrepresented sequences warn
366 #Sequence Count Percentage Possible Source 367 #Sequence Count Percentage Possible Source
367 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT 33 0.672782874617737 No Hit 368 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT 33 0.672782874617737 No Hit
368 >>END_MODULE 369 >>END_MODULE