diff test-data/fastqc_data_customlimits.txt @ 18:3e1cdf5406db draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 8a5d4f0470a7778a87d01dc84578f94a30ab7f43

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastqc_data_customlimits.txt	Mon Nov 05 12:08:29 2018 -0500
@@ -0,0 +1,426 @@
+##FastQC	0.11.8
+>>Basic Statistics	pass
+#Measure	Value
+Filename	1000trimmed_fastq
+File type	Conventional base calls
+Encoding	Sanger / Illumina 1.9
+Total Sequences	4905
+Sequences flagged as poor quality	0
+Sequence length	1-108
+%GC	40
+>>END_MODULE
+>>Per base sequence quality	pass
+#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
+1	29.282772680937818	31.0	27.0	33.0	23.0	34.0
+2	28.832925336597306	30.0	27.0	32.0	22.0	33.0
+3	28.896953588223266	30.0	27.0	32.0	23.0	34.0
+4	29.006785934608267	30.0	27.0	32.0	23.0	34.0
+5	28.9377990430622	30.0	27.0	32.0	22.0	34.0
+6	29.002938706968934	30.0	27.0	32.0	23.0	34.0
+7	28.899830220713074	30.0	27.0	32.0	22.0	34.0
+8	28.900706184463942	30.0	27.0	32.0	22.0	33.0
+9	28.754602555772145	30.0	27.0	32.0	22.0	34.0
+10-11	28.822083022456294	30.0	27.0	32.0	22.5	33.0
+12-13	28.74898578710789	30.0	26.5	32.0	22.0	33.0
+14-15	28.53370750727077	30.0	26.0	32.0	22.0	33.5
+16-17	28.52661127583153	30.0	26.0	32.0	22.0	33.0
+18-19	28.68343192244741	30.0	26.0	32.0	22.5	33.0
+20-21	28.370130166336985	29.5	26.0	32.0	22.0	33.0
+22-23	28.185946266098476	29.0	26.0	32.0	22.0	33.0
+24-25	28.13009469533431	29.0	26.0	32.0	21.5	33.0
+26-27	28.075768267577	29.0	26.0	32.0	21.5	33.0
+28-29	27.828024188665616	29.0	25.0	32.0	21.0	33.0
+30-31	27.792826876513317	29.0	25.0	31.5	21.0	33.0
+32-33	27.490989073616355	28.0	25.0	31.0	21.0	33.0
+34-35	27.357199679261562	28.0	24.5	31.0	21.0	33.0
+36-37	27.062158129410527	28.0	24.0	31.0	20.5	33.0
+38-39	27.238022216783758	28.0	24.0	31.0	21.0	33.0
+40-41	27.028963434226593	28.0	24.0	31.0	20.5	33.0
+42-43	26.90862078496675	27.0	24.0	31.0	20.5	33.0
+44-45	26.632003369751054	27.0	24.0	30.0	20.0	32.0
+46-47	26.83042786373109	27.5	24.0	31.0	20.5	32.0
+48-49	26.431681832255798	27.0	23.5	30.0	20.0	32.0
+50-51	26.219000735104444	27.0	23.0	30.0	20.0	32.0
+52-53	25.925690423864786	26.5	22.5	29.5	19.5	31.5
+54-55	27.995241016389798	29.5	25.5	31.5	20.5	33.0
+56-57	30.410857897242785	31.5	28.5	33.0	25.5	34.0
+58-59	30.4083885209713	31.5	28.5	33.0	25.5	34.0
+60-61	30.444812362030905	31.5	29.0	33.0	26.0	34.0
+62-63	30.44039735099338	31.5	29.0	33.0	25.5	34.0
+64-65	30.441712697003883	31.5	29.0	33.0	25.5	34.0
+66-67	30.51141384388807	32.0	29.0	33.0	25.5	34.0
+68-69	30.05117820324006	31.0	28.0	33.0	24.5	34.0
+70-71	30.276141384388808	31.0	29.0	33.0	25.0	34.0
+72-73	30.385493372606774	31.5	29.0	33.0	25.5	34.0
+74-75	30.213549337260677	31.0	28.5	33.0	25.5	34.0
+76-77	29.678939617083948	31.0	28.0	33.0	24.5	34.0
+78-79	30.019145802650957	31.0	28.0	33.0	24.5	34.0
+80-81	29.664212076583212	31.0	27.5	33.0	24.0	34.0
+82-83	29.653534609720175	31.0	28.0	32.5	24.5	34.0
+84-85	29.425625920471283	30.5	27.0	32.0	24.0	34.0
+86-87	29.34057437407953	30.0	27.0	32.5	24.0	34.0
+88-89	28.785714285714285	30.0	27.0	32.0	22.5	33.5
+90-91	28.667525773195877	29.5	26.0	32.0	23.0	33.0
+92-93	28.565905743740796	29.0	26.0	32.0	23.0	33.0
+94-95	28.271723122238583	29.0	26.0	32.0	22.5	33.0
+96-97	27.94955817378498	29.0	25.5	31.0	22.0	33.0
+98-99	27.641132075471695	28.0	25.0	31.0	21.5	33.0
+100-101	27.614716981132077	28.0	25.0	31.0	21.5	33.0
+102-103	27.196226415094337	28.0	24.5	31.0	21.0	32.5
+104-105	26.870943396226416	27.5	24.0	31.0	20.0	32.5
+106-107	26.367593937711003	27.0	23.5	30.0	20.5	32.0
+108	27.5650623885918	28.0	24.0	31.0	22.0	33.0
+>>END_MODULE
+>>Per sequence quality scores	warn
+#Quality	Count
+20	7.0
+21	24.0
+22	47.0
+23	78.0
+24	226.0
+25	513.0
+26	830.0
+27	1017.0
+28	947.0
+29	645.0
+30	352.0
+31	157.0
+32	55.0
+33	6.0
+34	1.0
+>>END_MODULE
+>>Per base sequence content	pass
+#Base	G	A	T	C
+1	21.223241590214066	33.00713557594291	25.97349643221203	19.79612640163099
+2	23.76580987352101	31.415748674010608	27.315381476948186	17.503059975520195
+3	21.876916785933346	28.70578613780413	29.46227765283173	19.95501942343079
+4	21.55048324079786	28.295290972650626	28.850503804236066	21.303721982315444
+5	21.219055543998337	30.205949656750576	28.271271063033076	20.303723736218014
+6	22.124265323257767	28.946263643996637	26.364399664147776	22.565071368597817
+7	21.943972835314092	29.9660441426146	28.395585738539896	19.69439728353141
+8	21.378129681147016	28.825165846351382	27.8621870318853	21.934517440616304
+9	20.077972709551656	29.088152479965345	28.654970760233915	22.17890405024908
+10-11	21.243237275035884	29.468919068124105	27.680247322512976	21.607596334327038
+12-13	20.8276950834461	29.03698691926026	29.18358141632837	20.951736580965267
+14-15	20.24001846295869	28.975305792753286	29.471497807523654	21.313177936764365
+16-17	19.83872880351002	29.396418830783826	29.621724178821296	21.14312818688486
+18-19	20.845552297165202	27.871456500488755	29.973118279569892	21.309872922776147
+20-21	20.538172715894866	28.973717146433042	29.111389236545683	21.376720901126408
+22-23	20.88082901554404	30.129533678756477	29.300518134715027	19.689119170984455
+24-25	20.506974248927037	29.07725321888412	29.05042918454936	21.365343347639485
+26-27	20.86603139013453	28.054932735426007	30.339125560538115	20.739910313901344
+28-29	19.32600732600733	30.842490842490843	28.776556776556777	21.054945054945055
+30-31	20.638820638820636	29.19226044226044	29.49938574938575	20.669533169533167
+32-33	19.47989016314004	29.009853012437407	29.38136003876595	22.1288967856566
+34-35	19.6674020023757	29.713219073477003	30.205328355676226	20.41405056847107
+36-37	20.443482963764197	29.853975121687398	30.61114115738237	19.091400757166035
+38-39	20.992661259173424	28.041714947856317	30.088837388953266	20.876786404016993
+40-41	19.860197368421055	28.680098684210524	30.32483552631579	21.134868421052634
+42-43	20.01321003963012	27.873183619550858	30.823425803610743	21.29018053720828
+44-45	18.941371943982908	30.192262046047947	29.954901495371466	20.911464514597675
+46-47	20.1888718734048	28.126595201633485	31.470137825421133	20.21439509954058
+48-49	19.56159822419534	29.689234184239734	28.77358490566038	21.975582685904552
+50-51	20.50656087885261	28.2575526396094	30.759841318278912	20.47604516325908
+52-53	17.691256830601095	29.918032786885245	31.864754098360653	20.525956284153004
+54-55	17.214912280701753	32.30994152046784	29.53216374269006	20.942982456140353
+56-57	19.30856932695844	30.893710923133504	30.893710923133504	18.90400882677455
+58-59	20.014716703458426	29.72774098601913	31.42016188373804	18.8373804267844
+60-61	17.402501839587934	33.18616629874908	29.506990434142754	19.904341427520237
+62-63	18.543046357615893	29.72774098601913	32.2663723325975	19.462840323767477
+64-65	16.893632683106365	32.94074346705926	30.180345969819655	19.985277880014724
+66-67	18.519882179675996	28.902798232695137	32.80559646539028	19.771723122238587
+68-69	17.2680412371134	30.375552282768776	31.66421207658321	20.692194403534607
+70-71	17.673048600883654	27.798232695139912	35.34609720176731	19.182621502209134
+72-73	16.200294550810014	29.528718703976438	33.87334315169367	20.39764359351988
+74-75	18.372606774668633	28.019145802650957	34.5360824742268	19.072164948453608
+76-77	16.678939617083945	31.70103092783505	31.73784977908689	19.88217967599411
+78-79	18.77761413843888	28.387334315169365	32.62150220913107	20.213549337260677
+80-81	16.384388807069218	30.927835051546392	32.9160530191458	19.771723122238587
+82-83	17.083946980854197	30.927835051546392	32.54786450662739	19.44035346097202
+84-85	16.936671575846834	31.590574374079527	31.443298969072163	20.029455081001473
+86-87	17.488954344624446	27.908689248895435	34.20471281296024	20.39764359351988
+88-89	16.789396170839467	32.36377025036819	31.075110456553755	19.771723122238587
+90-91	19.587628865979383	29.749631811487482	33.5419734904271	17.120765832106038
+92-93	17.746686303387335	30.04418262150221	31.33284241531664	20.876288659793815
+94-95	18.924889543446245	28.460972017673047	33.39469808541973	19.219440353460975
+96-97	16.42120765832106	29.418262150220915	32.47422680412371	21.686303387334316
+98-99	18.158090976882924	29.34377330350485	33.1469052945563	19.351230425055927
+100-101	17.77358490566038	29.849056603773583	33.28301886792453	19.09433962264151
+102-103	18.339622641509436	29.509433962264154	30.90566037735849	21.245283018867926
+104-105	18.037735849056606	28.67924528301887	31.77358490566038	21.50943396226415
+106-107	17.2782874617737	29.357798165137616	33.52446483180428	19.839449541284402
+108	20.053475935828878	26.38146167557932	31.72905525846702	21.836007130124777
+>>END_MODULE
+>>Per sequence GC content	warn
+#GC Content	Count
+0	15.0
+1	15.5
+2	16.5
+3	17.0
+4	18.0
+5	21.5
+6	26.5
+7	30.0
+8	33.5
+9	36.0
+10	41.0
+11	47.0
+12	47.5
+13	56.0
+14	65.5
+15	69.0
+16	72.5
+17	78.0
+18	86.5
+19	94.5
+20	105.5
+21	113.0
+22	123.0
+23	132.5
+24	149.5
+25	172.5
+26	200.0
+27	222.0
+28	247.0
+29	282.0
+30	310.5
+31	337.0
+32	370.0
+33	403.5
+34	438.0
+35	465.0
+36	481.5
+37	511.0
+38	523.5
+39	506.0
+40	491.0
+41	491.5
+42	482.0
+43	483.0
+44	487.5
+45	471.5
+46	471.0
+47	468.5
+48	473.5
+49	472.0
+50	437.5
+51	415.5
+52	407.5
+53	398.0
+54	381.0
+55	364.0
+56	349.0
+57	341.0
+58	330.5
+59	320.0
+60	320.5
+61	301.0
+62	275.0
+63	245.0
+64	207.0
+65	190.5
+66	182.0
+67	173.0
+68	167.0
+69	151.5
+70	131.5
+71	121.0
+72	117.5
+73	110.5
+74	104.0
+75	90.5
+76	75.0
+77	67.5
+78	62.5
+79	61.5
+80	59.5
+81	57.0
+82	54.5
+83	47.0
+84	39.5
+85	38.0
+86	36.5
+87	35.5
+88	28.0
+89	21.0
+90	19.5
+91	17.0
+92	15.5
+93	14.5
+94	13.5
+95	13.5
+96	15.0
+97	15.5
+98	17.0
+99	16.0
+100	13.5
+>>END_MODULE
+>>Per base N content	pass
+#Base	N-Count
+1	0.0
+2	0.0
+3	0.0
+4	0.0
+5	0.0
+6	0.0
+7	0.0
+8	0.0
+9	0.0
+10-11	0.0
+12-13	0.0
+14-15	0.0
+16-17	0.0
+18-19	0.0
+20-21	0.0
+22-23	0.0
+24-25	0.0
+26-27	0.0
+28-29	0.0
+30-31	0.0
+32-33	0.0
+34-35	0.0
+36-37	0.0
+38-39	0.0
+40-41	0.0
+42-43	0.0
+44-45	0.0
+46-47	0.0
+48-49	0.0
+50-51	0.0
+52-53	0.0
+54-55	0.0
+56-57	0.0
+58-59	0.0
+60-61	0.0
+62-63	0.0
+64-65	0.0
+66-67	0.0
+68-69	0.0
+70-71	0.0
+72-73	0.0
+74-75	0.0
+76-77	0.0
+78-79	0.0
+80-81	0.0
+82-83	0.0
+84-85	0.0
+86-87	0.0
+88-89	0.0
+90-91	0.0
+92-93	0.0
+94-95	0.0
+96-97	0.0
+98-99	0.0
+100-101	0.0
+102-103	0.0
+104-105	0.0
+106-107	0.0
+108	0.0
+>>END_MODULE
+>>Sequence Length Distribution	warn
+#Length	Count
+0-4	98.0
+5-9	250.0
+10-14	257.0
+15-19	279.0
+20-24	321.0
+25-29	396.0
+30-34	401.0
+35-39	433.0
+40-44	401.0
+45-49	385.0
+50-54	320.0
+55-59	5.0
+60-64	1.0
+65-69	0.0
+70-74	0.0
+75-79	0.0
+80-84	0.0
+85-89	0.0
+90-94	0.0
+95-99	33.0
+100-104	0.0
+105-109	1325.0
+>>END_MODULE
+>>Sequence Duplication Levels	pass
+#Total Deduplicated Percentage	98.73598369011212
+#Duplication Level	Percentage of deduplicated	Percentage of total
+1	99.44249432170142	98.1855249745158
+2	0.47491224447656405	0.9378185524974516
+3	0.041296716911005574	0.12232415902140673
+4	0.020648358455502787	0.08154943934760449
+5	0.0	0.0
+6	0.0	0.0
+7	0.0	0.0
+8	0.0	0.0
+9	0.0	0.0
+>10	0.020648358455502787	0.672782874617737
+>50	0.0	0.0
+>100	0.0	0.0
+>500	0.0	0.0
+>1k	0.0	0.0
+>5k	0.0	0.0
+>10k+	0.0	0.0
+>>END_MODULE
+>>Overrepresented sequences	warn
+#Sequence	Count	Percentage	Possible Source
+ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT	33	0.672782874617737	No Hit
+>>END_MODULE
+>>Adapter Content	pass
+#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
+1	0.0	0.0	0.0	0.0	0.0
+2	0.0	0.0	0.0	0.0	0.0
+3	0.0	0.0	0.0	0.0	0.0
+4	0.0	0.0	0.0	0.0	0.0
+5	0.0	0.0	0.0	0.0	0.0
+6	0.0	0.0	0.0	0.0	0.0
+7	0.0	0.0	0.0	0.0	0.0
+8	0.0	0.0	0.0	0.0	0.0
+9	0.0	0.0	0.0	0.0	0.0
+10-11	0.0	0.0	0.0	0.0	0.0
+12-13	0.0	0.0	0.0	0.0	0.0
+14-15	0.0	0.0	0.0	0.0	0.0
+16-17	0.0	0.0	0.0	0.0	0.0
+18-19	0.0	0.0	0.0	0.0	0.0
+20-21	0.12232415902140673	0.0	0.0	0.0	0.0
+22-23	0.12232415902140673	0.0	0.0	0.0	0.0
+24-25	0.12232415902140673	0.0	0.0	0.0	0.0
+26-27	0.1325178389398573	0.0	0.0	0.0	0.0
+28-29	0.2038735983690112	0.0	0.0	0.0	0.0
+30-31	0.22426095820591233	0.0	0.0	0.0	0.0
+32-33	0.22426095820591233	0.0	0.0	0.0	0.0
+34-35	0.24464831804281345	0.0	0.0	0.0	0.0
+36-37	0.3058103975535168	0.0	0.0	0.0	0.0
+38-39	0.4383282364933741	0.0	0.0	0.0	0.0
+40-41	0.4689092762487258	0.0	0.0	0.0	0.0
+42-43	0.4689092762487258	0.0	0.0	0.0	0.0
+44-45	0.4689092762487258	0.0	0.0	0.0	0.0
+46-47	0.4689092762487258	0.0	0.0	0.0	0.0
+48-49	0.4689092762487258	0.0	0.0	0.0	0.0
+50-51	0.4689092762487258	0.0	0.0	0.0	0.0
+52-53	0.4689092762487258	0.0	0.0	0.0	0.0
+54-55	0.4689092762487258	0.0	0.0	0.0	0.0
+56-57	0.4689092762487258	0.0	0.0	0.0	0.0
+58-59	0.4689092762487258	0.0	0.0	0.0	0.0
+60-61	0.4689092762487258	0.0	0.0	0.0	0.0
+62-63	0.4689092762487258	0.0	0.0	0.0	0.0
+64-65	0.4689092762487258	0.0	0.0	0.0	0.0
+66-67	0.4689092762487258	0.0	0.0	0.0	0.0
+68-69	0.4689092762487258	0.0	0.0	0.0	0.0
+70-71	0.4689092762487258	0.0	0.0	0.0	0.0
+72-73	0.4689092762487258	0.0	0.0	0.0	0.0
+74-75	0.4689092762487258	0.0	0.0	0.0	0.0
+76-77	0.4689092762487258	0.0	0.0	0.0	0.0
+78-79	0.4689092762487258	0.0	0.0	0.0	0.0
+80-81	0.4689092762487258	0.0	0.0	0.0	0.0
+82-83	0.4689092762487258	0.0	0.0	0.0	0.0
+84-85	0.4689092762487258	0.0	0.0	0.0	0.0
+86-87	0.4689092762487258	0.0	0.0	0.0	0.0
+88-89	0.4689092762487258	0.0	0.0	0.0	0.0
+90-91	0.4689092762487258	0.0	0.0	0.0	0.0
+92-93	0.4689092762487258	0.0	0.0	0.0	0.0
+94-95	0.4689092762487258	0.0	0.0	0.0	0.0
+96-97	0.47910295616717635	0.0	0.0	0.0	0.0
+>>END_MODULE
+>>Kmer Content	pass
+>>END_MODULE