diff test-data/fastqc_data.txt @ 1:8fae48caaf06 draft

Uploaded form GH

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastqc_data.txt	Tue Nov 11 12:46:27 2014 -0500
@@ -0,0 +1,934 @@
+##FastQC	0.11.2
+>>Basic Statistics	pass
+#Measure	Value
+Filename	1000gsample.fastq
+File type	Conventional base calls
+Encoding	Sanger / Illumina 1.9
+Total Sequences	5000
+Sequences flagged as poor quality	0
+Sequence length	54
+%GC	43
+>>END_MODULE
+>>Per base sequence quality	warn
+#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
+1	28.9946	31.0	27.0	33.0	22.0	34.0
+2	28.486	30.0	26.0	32.0	21.0	33.0
+3	28.5272	30.0	26.0	32.0	21.0	34.0
+4	28.6252	30.0	26.0	32.0	22.0	33.0
+5	28.4804	30.0	26.0	32.0	21.0	33.0
+6	28.5128	30.0	26.0	32.0	22.0	33.0
+7	28.4102	30.0	26.0	32.0	21.0	33.0
+8	28.4674	30.0	26.0	32.0	22.0	33.0
+9	28.182	30.0	26.0	32.0	21.0	33.0
+10	28.0908	30.0	26.0	32.0	21.0	33.0
+11	28.1876	30.0	26.0	32.0	21.0	33.0
+12	28.1742	30.0	26.0	32.0	21.0	33.0
+13	27.923	30.0	25.0	32.0	20.0	33.0
+14	27.8984	29.0	25.0	32.0	21.0	33.0
+15	27.6112	29.0	25.0	32.0	20.0	33.0
+16	27.6638	29.0	25.0	32.0	20.0	33.0
+17	27.5734	29.0	25.0	32.0	20.0	33.0
+18	27.6348	29.0	25.0	32.0	20.0	33.0
+19	27.6526	29.0	25.0	32.0	20.0	33.0
+20	27.2716	29.0	24.0	32.0	19.0	33.0
+21	27.2642	29.0	25.0	31.0	19.0	33.0
+22	26.881	28.0	24.0	31.0	19.0	33.0
+23	26.8124	28.0	24.0	31.0	19.0	33.0
+24	26.8204	28.0	24.0	31.0	19.0	33.0
+25	26.6606	28.0	24.0	31.0	18.0	33.0
+26	26.3806	28.0	23.0	31.0	18.0	33.0
+27	25.947	28.0	23.0	31.0	17.0	33.0
+28	25.7446	27.0	22.0	31.0	16.0	33.0
+29	25.6856	27.0	22.0	31.0	16.0	33.0
+30	25.5228	27.0	22.0	31.0	16.0	33.0
+31	25.354	27.0	22.0	30.0	16.0	32.0
+32	25.1656	27.0	22.0	30.0	16.0	32.0
+33	25.0164	26.0	21.0	30.0	15.0	32.0
+34	24.75	26.0	21.0	30.0	15.0	32.0
+35	24.3926	26.0	21.0	30.0	15.0	32.0
+36	24.1122	25.0	20.0	30.0	14.0	32.0
+37	23.8612	25.0	20.0	29.0	13.0	32.0
+38	23.7544	25.0	20.0	29.0	13.0	32.0
+39	23.485	25.0	19.0	29.0	13.0	32.0
+40	23.1984	24.0	19.0	29.0	13.0	32.0
+41	23.0976	24.0	19.0	29.0	13.0	32.0
+42	22.9212	24.0	19.0	28.0	13.0	31.0
+43	22.5172	24.0	18.0	28.0	12.0	31.0
+44	22.3234	23.0	18.0	28.0	12.0	31.0
+45	22.1372	23.0	18.0	28.0	11.0	31.0
+46	22.2166	23.0	18.0	28.0	11.0	31.0
+47	22.075	23.0	18.0	28.0	11.0	31.0
+48	21.4592	22.0	17.0	27.0	11.0	31.0
+49	21.0954	22.0	16.0	27.0	10.0	30.0
+50	20.9356	22.0	16.0	27.0	10.0	30.0
+51	20.6152	21.0	15.0	27.0	9.0	30.0
+52	20.6588	21.0	16.0	27.0	9.0	30.0
+53	19.5852	20.0	14.0	25.0	9.0	29.0
+54	19.9424	21.0	14.0	26.0	7.0	30.0
+>>END_MODULE
+>>Per tile sequence quality	pass
+#Tile	Base	Mean
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+8	12	0.009504167330256053
+8	13	1.1938692906979327
+8	14	1.000658988638527
+8	15	0.6402128703918954
+8	16	1.2944615288093537
+8	17	-0.04942764822560264
+8	18	1.183118918592065
+8	19	0.842535671205745
+8	20	0.47382089351398804
+8	21	-0.23755421617313743
+8	22	-0.6145768014310278
+8	23	-0.7231244231755767
+8	24	-0.6094820780242785
+8	25	-0.5968633441011981
+8	26	0.4984320425241151
+8	27	0.27591326831736396
+8	28	-0.3545082680888356
+8	29	0.7847868726896827
+8	30	1.3575910761588545
+8	31	2.432708519102377
+8	32	0.17886784428984015
+8	33	1.3402323819970903
+8	34	0.3045832456829878
+8	35	-0.4031140101728319
+8	36	0.3619882277427031
+8	37	0.4401766661868969
+8	38	1.317397853638262
+8	39	0.5447701318289546
+8	40	-0.6924185220860437
+8	41	1.582163145181049
+8	42	1.4489577998017893
+8	43	0.8919753250443812
+8	44	1.0173415189527724
+8	45	1.1654227642207182
+8	46	1.5194121735042465
+8	47	2.5545490059812295
+8	48	1.6777655989932185
+8	49	0.3380778215816562
+8	50	1.5263375243682127
+8	51	-0.8929098806848152
+8	52	1.233525443013935
+8	53	0.5262569598630975
+8	54	2.859075956723018
+9	1	-1.2602813895396956
+9	2	-0.5699400798122021
+9	3	-0.4160196864800447
+9	4	-0.2769483940327966
+9	5	-1.8391938666619012
+9	6	0.16393689004942402
+9	7	0.004008654034226566
+9	8	-0.611366451110694
+9	9	-0.7996493872708683
+9	10	-0.9450135371874531
+9	11	1.1088914126510012
+9	12	1.7428375006635903
+9	13	0.1964836697829
+9	14	-1.0424782662634335
+9	15	0.3676638507840515
+9	16	-1.349982915635092
+9	17	0.45710829948681564
+9	18	-0.5443320618000911
+9	19	-0.16138589742170595
+9	20	0.4045398477623543
+9	21	-0.03690062140189809
+9	22	0.6566650286343325
+9	23	1.2801435506806307
+9	24	1.0140473337404288
+9	25	1.0155549565523962
+9	26	-0.4963391993059503
+9	27	-1.144348169591133
+9	28	-0.29241676482086376
+9	29	0.018773800794257056
+9	30	0.5935387885771561
+9	31	-0.04245487959043359
+9	32	1.076907059976115
+9	33	1.2108206172912048
+9	34	0.16209958555226933
+9	35	-0.3299113957937472
+9	36	0.6554522800302856
+9	37	0.16174529363787826
+9	38	-0.29240606793036505
+9	39	-0.46176581588346366
+9	40	-0.17477146326251614
+9	41	-0.3995362012241799
+9	42	0.40059178672989404
+9	43	-0.7929919952170579
+9	44	-0.9578218797400382
+9	45	0.6699979276194128
+9	46	0.124640931674179
+9	47	0.2408235157851486
+9	48	-0.37844355133357865
+9	49	0.3419993902091072
+9	50	-0.8756232599455132
+9	51	0.44826658990341883
+9	52	0.34398295935380574
+9	53	0.5347536918892395
+9	54	-1.9350416903358045
+10	1	1.0952741660158587
+10	2	1.4967265868544644
+10	3	1.317313646853286
+10	4	-0.3547261718105723
+10	5	-1.4614160888841212
+10	6	0.29727022338276043
+10	7	0.570675320700893
+10	8	0.7553002155559696
+10	9	-0.11076049838197832
+10	10	0.9660975739236584
+10	11	1.3200025237621134
+10	12	0.5761708339969225
+10	13	1.1742614475606779
+10	14	0.49085506706990145
+10	15	0.6676638507840522
+10	16	0.5944615288093544
+10	17	-0.2984472560687408
+10	18	-0.07766539513342252
+10	19	0.871947435911629
+10	20	0.6934287366512422
+10	21	-0.4924561769574538
+10	22	0.13444280641211037
+10	23	1.3356991062361878
+10	24	0.6140473337404266
+10	25	0.1933327343301734
+10	26	1.2592163562496026
+10	27	2.2112073859644212
+10	28	1.7964721240680284
+10	29	0.7632182452387006
+10	30	1.604649899688269
+10	31	1.8797673426317907
+10	32	0.47690705997611715
+10	33	-0.15584604937545876
+10	34	1.8398773633300465
+10	35	2.981199715317363
+10	36	0.8110078355858406
+10	37	1.8617452936378776
+10	38	1.7742605987363014
+10	39	3.2937897396720928
+10	40	3.2918952034041524
+10	41	1.3115749098869323
+10	42	2.911702897841007
+10	43	2.9292302270051636
+10	44	1.964400342482186
+10	45	0.5477757053971892
+10	46	1.9135298205630704
+10	47	1.2741568491184836
+10	48	2.799334226444202
+10	49	3.441999390209105
+10	50	4.391043406721156
+10	51	3.7815999232367545
+10	52	1.3217607371315836
+10	53	3.0125314696670173
+10	54	2.2316249763308633
+>>END_MODULE
+>>Per sequence quality scores	warn
+#Quality	Count
+8	4.0
+9	4.0
+10	2.0
+11	2.0
+12	4.0
+13	6.0
+14	4.0
+15	11.0
+16	20.0
+17	50.0
+18	98.0
+19	149.0
+20	210.0
+21	275.0
+22	367.0
+23	425.0
+24	518.0
+25	540.0
+26	539.0
+27	532.0
+28	468.0
+29	360.0
+30	234.0
+31	122.0
+32	51.0
+33	5.0
+>>END_MODULE
+>>Per base sequence content	warn
+#Base	G	A	T	C
+1	21.5	32.64	25.919999999999998	19.939999999999998
+2	24.04	31.72	26.540000000000003	17.7
+3	21.58	28.860000000000003	29.42	20.14
+4	21.58	28.28	28.9	21.240000000000002
+5	21.16	29.720000000000002	28.32	20.8
+6	22.38	29.24	25.72	22.66
+7	21.34	30.320000000000004	28.24	20.1
+8	21.58	29.060000000000002	27.939999999999998	21.42
+9	20.3	28.48	28.58	22.64
+10	21.2	30.84	26.56	21.4
+11	21.14	28.64	27.279999999999998	22.939999999999998
+12	21.32	28.88	28.999999999999996	20.8
+13	20.36	29.220000000000002	28.939999999999998	21.48
+14	20.02	29.2	29.220000000000002	21.560000000000002
+15	20.200000000000003	29.220000000000002	28.38	22.2
+16	20.34	29.38	29.299999999999997	20.979999999999997
+17	20.599999999999998	29.14	28.499999999999996	21.759999999999998
+18	20.599999999999998	27.92	29.4	22.08
+19	21.66	28.46	28.58	21.3
+20	20.0	29.24	28.96	21.8
+21	21.72	28.499999999999996	28.18	21.6
+22	20.52	30.880000000000003	27.3	21.3
+23	20.72	28.9	29.720000000000002	20.66
+24	21.12	28.62	27.58	22.68
+25	21.099999999999998	29.060000000000002	29.160000000000004	20.68
+26	22.18887555022009	28.391356542617046	28.131252501000397	21.288515406162464
+27	21.344268853770753	28.525705141028208	28.765753150630125	21.364272854570913
+28	19.34	30.54	27.46	22.66
+29	20.90418083616723	29.12582516503301	29.045809161832363	20.924184836967395
+30	21.099999999999998	29.4	27.439999999999998	22.06
+31	20.84	28.04	28.660000000000004	22.46
+32	19.847939175670266	28.371348539415763	28.7515006002401	23.02921168467387
+33	22.084416883376676	28.62572514502901	27.265453090618124	22.024404880976196
+34	21.304260852170433	29.285857171434287	27.265453090618124	22.144428885777156
+35	21.084216843368676	29.425885177035404	28.225645129025807	21.264252850570113
+36	21.404280856171233	28.665733146629325	28.805761152230446	21.124224844968996
+37	20.888355342136855	29.43177270908363	28.53141256502601	21.1484593837535
+38	21.864372874574915	29.02580516103221	28.065613122624526	21.044208841768352
+39	21.928771508603443	28.251300520208083	27.050820328131252	22.769107643057225
+40	21.32	28.499999999999996	27.82	22.36
+41	21.673003802281368	28.116870122073244	27.61656994196518	22.59355613368021
+42	22.29337602561537	28.036822093255953	27.71662997798679	21.953171903141886
+43	21.244248849769953	28.425685137027408	27.825565113022606	22.504500900180034
+44	21.404280856171233	28.985797159431886	27.545509101820365	22.064412882576516
+45	21.86	29.28	26.740000000000002	22.12
+46	21.26	27.54	27.74	23.46
+47	21.628651460584233	28.271308523409367	28.051220488195277	22.048819527811126
+48	21.279999999999998	28.439999999999998	26.400000000000002	23.880000000000003
+49	21.044208841768352	29.045809161832363	27.185437087417487	22.724544908981798
+50	21.82873149259704	28.15126050420168	26.810724289715886	23.209283713485394
+51	21.028411364545818	27.73109243697479	28.011204481792717	23.229291716686674
+52	21.824364872974595	30.146029205841167	25.94518903780756	22.084416883376676
+53	21.164232846569313	28.325665133026607	28.045609121824366	22.464492898579717
+54	21.53907976692787	27.024311834438418	26.90375728350412	24.5328511151296
+>>END_MODULE
+>>Per sequence GC content	warn
+#GC Content	Count
+0	3.0
+1	5.0
+2	7.0
+3	7.0
+4	7.0
+5	5.0
+6	2.0
+7	1.0
+8	1.5
+9	2.0
+10	1.5
+11	1.0
+12	2.5
+13	4.0
+14	4.0
+15	4.0
+16	5.0
+17	6.0
+18	11.0
+19	19.5
+20	23.0
+21	37.5
+22	52.0
+23	61.0
+24	70.0
+25	79.0
+26	88.0
+27	117.5
+28	147.0
+29	159.5
+30	172.0
+31	203.0
+32	243.0
+33	252.0
+34	290.0
+35	328.0
+36	330.0
+37	332.0
+38	332.5
+39	333.0
+40	342.0
+41	351.0
+42	343.5
+43	336.0
+44	318.5
+45	279.5
+46	258.0
+47	254.5
+48	251.0
+49	234.5
+50	218.0
+51	209.5
+52	201.0
+53	198.5
+54	196.0
+55	177.0
+56	162.5
+57	167.0
+58	147.0
+59	127.0
+60	106.5
+61	86.0
+62	85.0
+63	84.0
+64	61.5
+65	39.0
+66	42.5
+67	46.0
+68	34.0
+69	17.0
+70	12.0
+71	14.0
+72	16.0
+73	12.5
+74	9.0
+75	6.5
+76	4.0
+77	4.5
+78	5.0
+79	5.0
+80	5.0
+81	3.0
+82	1.0
+83	1.0
+84	1.0
+85	1.0
+86	1.0
+87	1.0
+88	1.0
+89	1.0
+90	2.0
+91	3.0
+92	2.5
+93	2.0
+94	2.0
+95	3.0
+96	4.0
+97	5.0
+98	6.0
+99	3.5
+100	1.0
+>>END_MODULE
+>>Per base N content	pass
+#Base	N-Count
+1	0.0
+2	0.0
+3	0.0
+4	0.0
+5	0.0
+6	0.0
+7	0.0
+8	0.0
+9	0.0
+10	0.0
+11	0.0
+12	0.0
+13	0.0
+14	0.0
+15	0.0
+16	0.0
+17	0.0
+18	0.0
+19	0.0
+20	0.0
+21	0.0
+22	0.0
+23	0.0
+24	0.0
+25	0.0
+26	0.04
+27	0.02
+28	0.0
+29	0.02
+30	0.0
+31	0.0
+32	0.04
+33	0.02
+34	0.02
+35	0.02
+36	0.02
+37	0.04
+38	0.02
+39	0.04
+40	0.0
+41	0.06
+42	0.06
+43	0.02
+44	0.02
+45	0.0
+46	0.0
+47	0.04
+48	0.0
+49	0.02
+50	0.04
+51	0.04
+52	0.02
+53	0.02
+54	0.45999999999999996
+>>END_MODULE
+>>Sequence Length Distribution	pass
+#Length	Count
+54	5000.0
+>>END_MODULE
+>>Sequence Duplication Levels	pass
+#Total Deduplicated Percentage	99.52
+#Duplication Level	Percentage of deduplicated	Percentage of total
+1	99.81913183279742	99.33999999999999
+2	0.08038585209003216	0.16
+3	0.04019292604501608	0.12
+4	0.0	0.0
+5	0.02009646302250804	0.1
+6	0.0	0.0
+7	0.04019292604501608	0.27999999999999997
+8	0.0	0.0
+9	0.0	0.0
+>10	0.0	0.0
+>50	0.0	0.0
+>100	0.0	0.0
+>500	0.0	0.0
+>1k	0.0	0.0
+>5k	0.0	0.0
+>10k+	0.0	0.0
+>>END_MODULE
+>>Overrepresented sequences	warn
+#Sequence	Count	Percentage	Possible Source
+CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	7	0.13999999999999999	Illumina Paired End PCR Primer 2 (96% over 33bp)
+CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7	0.13999999999999999	Illumina Paired End PCR Primer 2 (100% over 35bp)
+>>END_MODULE
+>>Adapter Content	pass
+#Position	Illumina Universal Adapter	Illumina Small RNA Adapter	Nextera Transposase Sequence
+1	0.0	0.0	0.0
+2	0.02	0.0	0.0
+3	0.02	0.0	0.0
+4	0.02	0.0	0.0
+5	0.02	0.0	0.0
+6	0.02	0.0	0.0
+7	0.02	0.0	0.0
+8	0.02	0.0	0.0
+9	0.02	0.0	0.0
+10	0.02	0.0	0.0
+11	0.02	0.0	0.0
+12	0.02	0.0	0.0
+13	0.02	0.0	0.0
+14	0.02	0.0	0.0
+15	0.02	0.0	0.0
+16	0.02	0.0	0.0
+17	0.02	0.0	0.0
+18	0.02	0.0	0.0
+19	0.06	0.0	0.0
+20	0.36	0.0	0.0
+21	0.36	0.0	0.0
+22	0.36	0.0	0.0
+23	0.36	0.0	0.0
+24	0.36	0.0	0.0
+25	0.4	0.0	0.0
+26	0.4	0.0	0.0
+27	0.42	0.0	0.0
+28	0.62	0.0	0.0
+29	0.66	0.0	0.0
+30	0.68	0.0	0.0
+31	0.68	0.0	0.0
+32	0.68	0.0	0.0
+33	0.68	0.0	0.0
+34	0.7	0.0	0.0
+35	0.76	0.0	0.0
+36	0.8	0.0	0.0
+37	0.88	0.0	0.0
+38	1.0	0.0	0.0
+39	1.12	0.0	0.0
+40	1.22	0.0	0.0
+41	1.38	0.0	0.0
+42	1.48	0.0	0.0
+>>END_MODULE
+>>Kmer Content	pass
+>>END_MODULE