Mercurial > repos > devteam > fastx_artifacts_filter

comparison fastx_artifacts_filter.xml @ 1:c8808979ba33

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Removed excess version attributes.
author Dave Bouvier <dave@bx.psu.edu>
date Tue, 03 Dec 2013 12:36:13 -0500
parents 7f9660a246c0
children 09070cacefd8
comparison
equal deleted inserted replaced
0:7f9660a246c0 1:c8808979ba33
8 -Q 33 8 -Q 33
9 #end if 9 #end if
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param format="fasta,fastqsanger,fastqsolexa,fastqillumina" version="1.0.0" name="input" type="data" label="Library to filter" /> 13 <param format="fasta,fastqsanger,fastqsolexa,fastqillumina" name="input" type="data" label="Library to filter" />
14 14
15 </inputs> 15 </inputs>
16 16
17 <tests> 17 <tests>
18 <test> 18 <test>
19 <!-- Filter FASTA file --> 19 <!-- Filter FASTA file -->
20 <param version="1.0.0" name="input" value="fastx_artifacts1.fasta" /> 20 <param name="input" value="fastx_artifacts1.fasta" />
21 <output version="1.0.0" name="output" file="fastx_artifacts1.out" /> 21 <param name="output" file="fastx_artifacts1.out" />
22 </test> 22 </test>
23 <test> 23 <test>
24 <!-- Filter FASTQ file --> 24 <!-- Filter FASTQ file -->
25 <param version="1.0.0" name="input" value="fastx_artifacts2.fastq" ftype="fastqsanger" /> 25 <param name="input" value="fastx_artifacts2.fastq" ftype="fastqsanger" />
26 <output version="1.0.0" name="output" file="fastx_artifacts2.out" /> 26 <param name="output" file="fastx_artifacts2.out" />
27 </test> 27 </test>
28 </tests> 28 </tests>
29 29
30 <outputs> 30 <outputs>
31 <data format="input" version="1.0.0" name="output" metadata_source="input" /> 31 <data format="input" name="output" metadata_source="input" />
32 </outputs> 32 </outputs>
33 <help> 33 <help>
34 **What it does** 34 **What it does**
35 35
36 This tool filters sequencing artifacts (reads with all but 3 identical bases). 36 This tool filters sequencing artifacts (reads with all but 3 identical bases).