Mercurial > repos > devteam > fastx_barcode_splitter

diff fastx_barcode_splitter_galaxy_wrapper.sh @ 3:8abdedf55101 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/fastx_toolkit/fastx_barcode_splitter commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:38:37 -0500
parents a12850d0559b
children
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--- a/fastx_barcode_splitter_galaxy_wrapper.sh	Tue Jun 03 14:50:45 2014 -0400
+++ b/fastx_barcode_splitter_galaxy_wrapper.sh	Wed Nov 11 12:38:37 2015 -0500
@@ -62,7 +62,7 @@
 PREFIX="$BASEPATH""${LIBNAME}__"
 SUFFIX=".txt"
 
-RESULTS=`zcat -f "$FASTQ_FILE" | fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
+RESULTS=`zcat -f < "$FASTQ_FILE" | fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
 if [ $? != 0 ]; then
 	echo "error"
 fi