Mercurial > repos > devteam > fastx_barcode_splitter
changeset 6:0b7ec11b3c7c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_barcode_splitter commit fd099d17eceaa319fbfe429f4725328d88b18c9f
| author | iuc |
|---|---|
| date | Thu, 10 Aug 2023 06:53:42 +0000 |
| parents | 4bedca26c133 |
| children | |
| files | fastx_barcode_splitter.xml macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/fastx_barcode_splitter.xml Thu Oct 11 09:35:51 2018 -0400 +++ b/fastx_barcode_splitter.xml Thu Aug 10 06:53:42 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="cshl_fastx_barcode_splitter" version="1.0.1" name="Barcode Splitter"> +<tool id="cshl_fastx_barcode_splitter" version="1.0.1+galaxy@VERSION_SUFFIX@" profile="22.05" name="Barcode Splitter"> <description></description> <macros> <import>macros.xml</import> @@ -8,7 +8,7 @@ mkdir split && @CATS@ '$__tool_directory__/fastx_barcode_splitter.pl' --bcfile '$BARCODE' --prefix 'split/' ---suffix +--suffix #if $input.is_of_type('fastqsanger', 'fastqsanger.gz', 'fastqsanger.bz2'): '.fastqsanger' #elif $input.is_of_type('fastqsolexa', 'fastqsolexa.gz', 'fastqsolexa.bz2'): @@ -78,7 +78,7 @@ <element name="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> </output_collection> </test> - + <test> <!-- Split a FASTQ.gz file --> <param name="BARCODE" value="fastx_barcode_splitter1.txt" />
--- a/macros.xml Thu Oct 11 09:35:51 2018 -0400 +++ b/macros.xml Thu Aug 10 06:53:42 2023 +0000 @@ -21,7 +21,9 @@ <token name="@GZIP@"> <![CDATA[ #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - -z + | gzip -c + #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): + | bzip2 -c #end if ]]> </token> @@ -32,6 +34,7 @@ </requirements> </xml> <token name="@VERSION@">0.0.14</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@SANGER@">fastqsanger,fastqsanger.gz,fastqsanger.bz2</token> <token name="@SOLEXA@">fastqsolexa,fastqsolexa.gz,fastqsolexa.bz2</token> <token name="@ILLUMINA@">fastqillumina,fastqillumina.gz,fastqillumina.bz2</token>