comparison macros.xml @ 4:b98f3fa516a3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_trimmer commit f3f313cb59922b945ac9587ff718b231d0f8db5c
author iuc
date Fri, 17 Aug 2018 05:06:06 -0400
parents bbb007a39ac2
children 547e8d00f11c
comparison
equal deleted inserted replaced
3:bbb007a39ac2 4:b98f3fa516a3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@CATS@"> 3 <token name="@CATS@">
4 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): 4 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
5 zcat -f '$input' | 5 gunzip -c -f '$input' |
6 #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): 6 #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
7 bzcat -f '$input' | 7 bzcat -f '$input' |
8 #else: 8 #else:
9 cat '$input' | 9 cat '$input' |
10 #end if 10 #end if