Mercurial > repos > devteam > fastx_trimmer
comparison macros.xml @ 4:b98f3fa516a3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_trimmer commit f3f313cb59922b945ac9587ff718b231d0f8db5c
author | iuc |
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date | Fri, 17 Aug 2018 05:06:06 -0400 |
parents | bbb007a39ac2 |
children | 547e8d00f11c |
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3:bbb007a39ac2 | 4:b98f3fa516a3 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <macros> | 2 <macros> |
3 <token name="@CATS@"> | 3 <token name="@CATS@"> |
4 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): | 4 #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): |
5 zcat -f '$input' | | 5 gunzip -c -f '$input' | |
6 #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): | 6 #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): |
7 bzcat -f '$input' | | 7 bzcat -f '$input' | |
8 #else: | 8 #else: |
9 cat '$input' | | 9 cat '$input' | |
10 #end if | 10 #end if |