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annotate test-data/freebayes_out_1.vcf.contains @ 11:e9ebed0c12f6 draft

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Check exit code instead of stderr, since FreeBayes writes warnings there (e.g. "Could not find any mapped reads in target region chr1:955302..955952"). Also document change of available options in FreeBayes >= 0.9.9.
author soranzo
date Mon, 17 Feb 2014 10:53:56 -0500
parents e54bb199a47b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
1 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
2