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annotate tool_dependencies.xml @ 11:e9ebed0c12f6 draft

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Check exit code instead of stderr, since FreeBayes writes warnings there (e.g. "Could not find any mapped reads in target region chr1:955302..955952"). Also document change of available options in FreeBayes >= 0.9.9.
author soranzo
date Mon, 17 Feb 2014 10:53:56 -0500
parents 07d55d9ea9a4
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61fe907fc37c Uploaded freebayes with tool dependencies
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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949ac66308a7 Update FreeBayes to 0.9.6_9608597d12e127c847ae03aa03440ab63992fedf.
Daniel Blankenberg <dan@bx.psu.edu>
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3 <package name="freebayes" version="0.9.6_9608597d12e127c847ae03aa03440ab63992fedf">
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07d55d9ea9a4 Uploaded updated tool dependency definition.
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4 <repository changeset_revision="7615ee9e216d" name="package_freebayes_0_9_6_9608597d" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
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61fe907fc37c Uploaded freebayes with tool dependencies
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5 </package>
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6 <package name="samtools" version="0.1.18">
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07d55d9ea9a4 Uploaded updated tool dependency definition.
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7 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
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61fe907fc37c Uploaded freebayes with tool dependencies
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8 </package>
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9 </tool_dependency>