comparison leftalign.xml @ 21:978760187fe2 draft

planemo upload commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d

20:8fb829f953d6

      <when value="history"> 
            <param name="input_bam" type="data" format="bam" label="BAM dataset to re-align" />
        <param name="ref_file" type="data" format="fasta" label="Using reference file" />
      </when>
    </conditional>
    <param name="iterations" type="integer" size="3" value="5" label="Maximum number of iterations" help="Iterate the left-realignment no more than this many times" />
  </inputs>
  <outputs>
    <data format="bam" name="output_bam" label="${tool.name} on ${on_string} (alignments)" />
  </outputs>
  <tests>

21:978760187fe2

      <when value="history"> 
            <param name="input_bam" type="data" format="bam" label="BAM dataset to re-align" />
        <param name="ref_file" type="data" format="fasta" label="Using reference file" />
      </when>
    </conditional>
    <param name="iterations" type="integer" value="5" label="Maximum number of iterations" help="Iterate the left-realignment no more than this many times" />
  </inputs>
  <outputs>
    <data format="bam" name="output_bam" label="${tool.name} on ${on_string} (alignments)" />
  </outputs>
  <tests>